KEGG   Paenibacillus ihbetae: BBD41_05840
Entry
BBD41_05840       CDS       T05154                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
pib  Paenibacillus ihbetae
Pathway
pib00300  Lysine biosynthesis
pib00550  Peptidoglycan biosynthesis
pib01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pib00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    BBD41_05840
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    BBD41_05840
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pib01011]
    BBD41_05840
Enzymes [BR:pib01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     BBD41_05840
Peptidoglycan biosynthesis and degradation proteins [BR:pib01011]
 Precursor biosynthesis
  Amino acid ligase
   BBD41_05840
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase DUF1611 RraA-like LpxD YqeC
Other DBs
NCBI-ProteinID: ANY72149
UniProt: A0A1B2DWS1
Position
complement(1273718..1275202)
AA seq 494 aa
MKLNELSSVLAAAVIDGAGDVEITGIQVDSREVKPGDLFICLPGHTVDGHDFAAQAAERG
AAALVVERKLDIDLPQILVKDSRFAMAGLANAFFNQPSSRMKMIGVTGTNGKTTTTYLIE
KIMNDHGLKTGLIGTIQMRYAGKSFPMPRTTPEALELQRNLNEMAEAGMQCCVMEVSSHA
LEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRAAKGLFFSRLGNAFPKDEPSRKYAVL
NADDEASAYFAKQTAAEVIYYGLGERADVRASNISITAQGTSFHVDTFRGSTDISIKMVG
KFNVYNAMAAIAAALLEGVPLEDIKHSLESVPGVDGRVEVVDEGQPYAVIVDYAHTPDGL
ENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYSDIVLVTSDNPRTEDPAAIL
KDIEAGLVEDRVSEDRYKLIVDRREAIQKAIEMASPGDVVLIAGKGHETYQLIAGEVLDF
DDRIVAKDAIRGRQ
NT seq 1485 nt   +upstreamnt  +downstreamnt
atgaaattgaatgaattatcatccgtgctggcagccgccgtgatcgacggtgccggtgac
gttgaaattaccggaatccaagttgattctcgggaagtaaagccgggcgatctgtttatt
tgccttccaggccataccgtggacggccatgactttgccgcccaggctgccgagcggggc
gcggccgcgctggttgtcgagcggaagcttgacatcgatcttccccagatcctcgtaaag
gacagccggtttgcgatggccgggctggccaatgcgttcttcaaccagcccagctcgcgg
atgaagatgatcggtgtaacggggaccaacggcaagacgacgaccacctatctgatcgag
aaaattatgaatgatcatggtttaaagaccggattgatcggaaccattcagatgcgatat
gcaggcaaatcgtttccgatgccgcgcacgacgccggaagcgctggagcttcagcggaac
ttgaacgagatggccgaagcaggcatgcagtgctgcgtgatggaggtttcctcccatgcg
ctggagcaggggcgagtcaagggcacggacttccgcaccgcgatctttacgaacctgacg
caggatcatcttgactatcatcatacgatggaagaataccgggcggccaaagggttattt
ttctcccgccttggcaacgcttttcccaaggacgaaccgtcccgcaaatacgccgtgctg
aatgccgatgacgaggcttccgcatatttcgccaagcagacggctgcggaggtcatctac
tacggcctaggcgagcgggcggatgtgcgggccagcaacatctcgatcacggcgcagggc
acatcgttccatgtggataccttccgcggcagcacggatatttccatcaagatggtaggg
aaattcaatgtctataacgctatggctgccattgcggcagcgctgctcgaaggcgttccg
cttgaggacatcaagcacagcctggaatccgttccgggcgtcgacggccgcgttgaggtt
gtcgatgagggtcagccgtatgcggtgatcgttgactatgcgcatacgcccgacgggctg
gaaaacgtgctgcggacggtcaatgaatttgcggagggacgcgtgctgaccgtgttcggc
tgcggcggcgaccgtgaccgcacgaaacgcccgatcatgggtaagatcgctgccaagtac
agcgatatcgtgctggttacctcggataatccgcgcaccgaggacccggcagcgatcctt
aaggatattgaggcgggactggttgaggaccgcgtgtccgaagaccgctataagctcatt
gtcgaccgccgcgaggccattcaaaaggctattgaaatggcaagcccgggcgatgtagta
ttgattgcggggaaaggtcatgagacctaccagctgattgcgggcgaagtgcttgatttt
gacgaccgcatcgtagccaaagacgcgataaggggcagacaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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