KEGG   Scheffersomyces stipitis: PICST_29472
Entry
PICST_29472       CDS       T01023                                 
Name
(RefSeq) component of RNA polymerase transcription factor
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
pic  Scheffersomyces stipitis
Pathway
pic03022  Basal transcription factors
pic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PICST_29472
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_29472
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_29472
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_29472
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PICST_29472
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PICST_29472
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA IBR
Other DBs
NCBI-GeneID: 4836813
NCBI-ProteinID: XP_001382831
JGI: 29472
UniProt: A3LN57
Position
2:complement(353249..354775)
AA seq 489 aa
MDVSDEEYSSPQKENEGMAKRTRSSGVQPRSGTVSDLKGANGYSWEDEYQRSWDIVKDDE
SGGRSLETIVRTIIENRKKKIMKNPTTPFQRGIIRTLIVIIDGSATMSEKDLRPSRFSMT
LQLLQDFVVEFFDQNPISQLGIILMRNGVSNLVSEVSGSPQYHIDKIRQLKSRQHNRYEP
KGDPSLQNSLEMARSLLKFNFGNNANDTKNSKEVLLIFGALFTSDPGDIHKTIDNLVKDE
IKVKIIGLSAQVAICQDLVNRTNHQQKNISSKNYGVIMNESHFKELFMDCVTPLPITTSQ
VNENAEANKGVPIIKMGFPTKIQPVLTSTLASNEYTIEFPQLSASDPTHGLDDNQVVEIN
NGTDSSIQATNVIGYQCPQCKSKVCNLPTVCPVCGLMLILSTHLARSYHHLVPLVPFKEV
PVSSKYNSKHCFGCLLKFPKGVSNTKSKSSLENMTSSRYRCMKCSHDFCIDCDVFIHETL
HNCPGCENK
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggacgtctcagacgaagagtatctgtctccacagaaggaaaatgagggtatggcaaag
agaacgcgatccagcggagtccagcccaggtctggaaccgttagcgacttgaaaggagct
aatggatattcttgggaagacgagtatcagcgttcatgggatattgtaaaagatgatgag
tccggtggccgttctctagagacaattgtaaggactatcatagagaaccgtaagaaaaaa
atcatgaagaatccgactactccatttcaaagaggcattataaggaccttgattgtcata
attgatggctcagctacgatgctggaaaaggacttaaggccgagccgattttcgatgact
ttacagcttttgcaggattttgtagttgagttttttgaccagaatccaatctctcaattg
ggtataattttgatgcgaaacggtgtctctaatcttgtcagtgaagtcagtggtctgccc
cagtatcatatcgataagatacgacaattgaaatcgagacagcacaaccgttacgaacca
aaaggtgacccttctctccagaactcgttagagatggctcgttccttgcttaaattcaac
ttcggcaataatgccaacgataccaaaaactcgaaagaagtgctccttatctttggagct
ttgttcacgagtgatcctggtgatatacataaaaccatagacaatcttgttaaggacgag
ataaaggtcaaaatcatagggctatctgcacaggtagctatctgccaggacttggtgaat
agaacaaaccatcagcaaaagaatattagctccaaaaattatggtgtcataatgaacgaa
tcgcatttcaaggagttgttcatggactgtgtgactccgttgcccataaccacttcacaa
gtaaacgagaacgctgaagccaacaaaggtgttcctatcataaagatgggattccccacg
aaaatacagcctgttctaacttctacgcttgccagtaacgaatatactattgagttcccg
caactaagtgcttctgatcccacacatggactcgatgataaccaagtagtggaaatcaac
aatggaacagactcttcgatccaggctactaacgtcattggctaccaatgtccgcagtgt
aaaagtaaagtctgtaatttaccaactgtgtgccctgtctgcggactcatgttgattctt
tcgacgcatttggcaagatcctaccatcatttggtaccactagtccctttcaaggaagtt
ccagtcagttcaaagtataatagcaagcattgctttggctgtctacttaagtttccgaag
ggagtgagcaatactaaatccaaaagctcgttagagaatatgaccagttctcgttacaga
tgtatgaagtgtagccatgatttctgtatagactgtgatgtattcatccatgaaactttg
cacaactgtcctggatgtgagaacaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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