KEGG T01023: PICST

Scheffersomyces stipitis: PICST_29855

Entry

PICST_29855 CDS T01023

Gene name

TFB2

Definition

RNA polymerase II transcription factor B subunit 2 (RNA polymerase II transcription factor B p52 subunit) (RNA polymerase II transcription factor B 52 kDa subunit)

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

pic Scheffersomyces stipitis

Pathway

pic03022	Basal transcription factors
pic03420	Nucleotide excision repair

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:pic03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pic03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 515 aa
MSSSNLFKATVNEYLEGLPQPVQSKLYEAPATCLAIFRLLTPMAKFYIMTMLFNDRPVAL
RDLDRWCKPHAKKLQFDSLKRLTSLHLIEEDRGGNHIRLNPTFRQNFRNCLTGSQQSNAF
GNLCTTTDKHRVDISFLDNFASSKWETILHFMVGTEATATPTTSVLSLLKSGGLMEGPGN
SPQNLKITNTGFQFLLQDVNAQIWTLLLQYLNLTQELHMDPVDVLNFIFVLGSLELGKSY
LVSSLSATQVSMLADLRDYGLVYQRTDSSGRFYPTRLATTLTSDSAALKTPSMAIEQALG
ASDGGEEQQIDTPTGNQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVCGQIT
RESIRSALYNGITADQIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAPQSKV
SGEGNVAQHKLEILPPTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYASEVG
VLVWSDKIKKKFFVTAEGMTQVAEFANRKFQRNRQ

NT seq 1548 nt +upstreamnt +downstreamnt
atgtcgtccagcaatctattcaaggctacggtcaatgagtacctcgagggccttccacag
cccgtacaatctaagttgtacgaggcccctgcgacttgtctagccatttttagattgtta
acacccatggccaagttctatataatgacgatgttattcaacgatcgaccggtagcactt
cgagatttggacagatggtgcaagccacatgcaaaaaagttacagtttgactctcttaaa
cggttgacatcattgcatttgatagaagaagacagaggagggaatcatatacggcttaat
cctacctttcgccagaactttcgcaactgcttgaccggttctcagcaactgaatgcgttt
ggtaatctttgtacaaccacagataagcatagagtagatatctcgttcttagataatttt
gcatcctccaaatgggaaactattcttcatttcatggtgggcactgaggccaccgctaca
cctacaacgtcagtactttcattattgaagctgggaggcttgatggaaggacccggtaat
agtccccaaaacctcaaaatcaccaacactggtttccagttccttttgcaggacgtcaac
gctcagatttggacgttgttgctccagtatttgaacttgacccaggaattgcatatggac
cctgtagatgtattgaactttatctttgtgttgggttcactagaacttggtaagagttac
ttggtatccagtttgagtgctacgcaggtgagtatgttggcggatttgcgcgattatggg
cttgtttaccaacgaacagactcttctggtagattctatcccaccagacttgctacaacg
ttgacatcagattcagcagccttgaaaacaccttctatggctatagaacaagcacttgga
gcttcagatggaggtgaagaacaacagattgacactccaacgggtaaccagggtactgta
atcatcgagacaaacttcaagttgtacgcatacaccaactctccgcttgagatagctatt
ctcaacctctttgtccatctaaagtctagattcaccaatatggtgtgtgggcaaatcaca
agagagtctattcgtagtgccttgtacaacggcattaccgcagatcagatcatcaagttc
ttggaaactcacgcgcatccccagatgaagttgttggcaaaggagaaattggacaagaag
attgaattcgatacaagccataatatcaacactgctggaggtgctccacaatcaaaagtg
tcaggtgaaggcaatgtagctcagcataagttagaaattcttcctccaacagtagtagat
caaataaagctctggcaattggaattagatagaatccaaacatttgatgggtatcttttc
aaagacttctctaaccaacaggagttcgacaccttgtccaattatgcatcagaggtcggc
gttcttgtttggagtgacaaaatcaaaaagaaattctttgttacagcagaagggatgacg
caggtggccgagtttgccaataggaagttccaaagaaacagacagtaa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PIC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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