KEGG   Scheffersomyces stipitis: PICST_50344
Entry
PICST_50344       CDS       T01023                                 
Symbol
RAD3
Name
(RefSeq) DNA helicase component of transcription factor b
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03022  Basal transcription factors
pic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PICST_50344 (RAD3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_50344 (RAD3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_50344 (RAD3)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_50344 (RAD3)
Enzymes [BR:pic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PICST_50344 (RAD3)
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PICST_50344 (RAD3)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PICST_50344 (RAD3)
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 DEAD ResIII YtxC
Other DBs
NCBI-GeneID: 4841113
NCBI-ProteinID: XP_001386596
JGI: 50344
UniProt: A3M0P3
Position
8:926894..929275
AA seq 793 aa
MKFFIDDLPVLFPYPRIYPEQYAYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ
MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRSTELGYVEEFRGLGLTSRKNLCVHPTI
SQERKGNVVDEKCRRITNGQLKERIAKGLVTPDQEVNHAEANTLCDMHENMNDMDQHNLI
PAGVYSFDALIKYCKQEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSKELSKDSI
IIFDEAHNIDNVCIESLSLDLTDDTLKRATRGANKLGDAVDEMKAHDSEKLQNEYEKLVE
GLRQAEIARDEELFMSNPTLPQDLLDEAIPGNIRKAEHFISFLKRFIEYLKTRMKVLHVI
SETPISFLQHLKELTFIDRKPLRFCSERLSLLVRTLELSEIEDFHALKDIATFATLVSTY
DTGFQLILEPFESEGSTVPNPILHFICLDASIAIKPVFERFSSVIITSGTISPLDMYPKM
MNFQTVIQESYTMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFSKI
TPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKYKLILVETPDAQETSLALETYRKACSN
GRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIREND
FLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFSKKKNQLPKWIAQALNDSDTNLSTDM
ALATARKFLRSLAQPANPKDQEGVSVWNIEQLQQFQQQQQMRMEALGVAKEKGNGDAAEE
DFMDIDDDDLDLL
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgaagttctttatcgatgatcttcccgtgttgttcccgtatccccggatatacccggaa
cagtatgcgtatatgtgtgatatcaagaagactcttgatgtaggaggaaattgtatcctt
gaaatgccttcaggaactggtaagactgtttcgttgttgtcgctaacagtagcctatcag
atgcattacccggagcaccgtaagattgtatattgttcgcgtacaatgtctgaaatcgag
aaagcgctaattgagttgcacaagttgatggagttcagatcgacagagttggggtatgta
gaagaattccgtggattgggacttacctccagaaaaaacttatgtgtccatcccacaata
tcccaagaaagaaagggaaatgtagttgatgaaaagtgtcgtagaatcacgaacggccag
ttgaaagagagaatcgcgaaagggcttgttactccagatcaggaggttaaccatgctgaa
gccaacaccctctgtgatatgcacgagaacatgaacgacatggaccagcacaatttgatt
cccgcgggcgtatactcatttgacgcgttgatcaagtattgtaagcaagaaggaacttgt
ccttacttcacagtgagaagaatgattcccttctgtaatatcattatttactcgtatcac
tacttgttggatcccaagatcgcagaaagagtctctaaggagctttctaaagacagtatc
atcatctttgatgaagcgcacaacattgataacgtctgtattgagtcgttgtctctagac
ttaactgatgataccttgaaaagagccaccagaggagccaacaagttgggagacgctgtg
gacgaaatgaaagcccatgatagtgaaaagctccagaacgaatacgagaagttggtagag
ggcttgcggcaggcagaaattgcgagagatgaagagcttttcatgagcaacccaacattg
ccgcaggatttgctcgacgaagctatccccggaaacatccgcaaggctgaacatttcatc
tcgttcttgaagcggtttatagaatatttgaaaacgagaatgaaagtgctacacgttatt
agtgaaactcccattagcttcctacagcatttgaaagaattaacgttcatagataggaaa
ccattgagattctgttctgagcggttatcacttttggtgagaacgttggaattgtctgaa
attgaagatttccatgccttgaaggatatcgctacatttgctacactagtttccacatac
gatactggattccagcttatcttggaaccatttgaatcagaagggtctacggtgcctaat
ccaatattgcatttcatctgtttggatgcatctattgcaatcaaacctgtgtttgagcgt
ttctcctcagtgatcatcacctcaggaaccatttcacctttggacatgtatccaaagatg
atgaactttcagactgtgatacaggaatcttataccatgacattggctaggagatcattc
ttgcccatgatcgtcacaaagggctcggatcaagtgtccatctcatccagatttgaaatc
cgtaacgatccatcggtggtgagaaattatgggtcacttttgattgaattctccaagata
acaccagacggaatggtggttttcttcccctcgtatctatacatggagtctatcatttct
atgtggcagactatgggtgttttagatgaggtgtggaaatacaagcttatactcgtagaa
actcccgatgcccaagagacatcgttggccttggaaacttatagaaaggcctgttctaat
ggtagaggtgccgtcttgctttctgttgctcgtgggaaggtatctgaagggatcgatttt
gatcaccattacggaagaactgtactaatgattggtattccattccagtatacagagtcc
agaatcttgaaagcacgtttagaattcatgagagaccactttcagatcagagaaaacgat
ttcttatctttcgatgccatgagacatgccgcgcaatgtttgggaagagtcttgagagga
aaagatgactacggtattatggttcttgcagatagaagattttccaagaagaagaaccaa
ttgcctaaatggatagcccaagccttgaatgactccgataccaatttgtctacagatatg
gcgcttgccactgccaggaaatttttgcggagtcttgctcagccagcaaatcctaaggat
caagaaggtgtttctgtgtggaacatcgagcaattgcaacagttccagcaacagcagcag
atgagaatggaggcattgggagttgcgaaagaaaaaggaaacggcgatgctgccgaagag
gatttcatggatattgacgatgacgaccttgacttgttatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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