KEGG   Scheffersomyces stipitis: PICST_75374
Entry
PICST_75374       CDS       T01023                                 
Symbol
RPO21
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220)
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03020  RNA polymerase
pic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PICST_75374 (RPO21)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PICST_75374 (RPO21)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pic03021]
    PICST_75374 (RPO21)
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_75374 (RPO21)
Enzymes [BR:pic01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PICST_75374 (RPO21)
Transcription machinery [BR:pic03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     PICST_75374 (RPO21)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PICST_75374 (RPO21)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 4852036
NCBI-ProteinID: XP_001386996
JGI: 75374
UniProt: A3GID7
Position
1:3464674..3469963
AA seq 1739 aa
MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLG
SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENN
PAMAQAIKIRDPKKRFNAVWQLCKAKMVCETDIIEEGATETTTRGGCGHTQPTIRRDGLK
LWGTWRHNKNFEENEQPERRLLTPSEILNVLKHISSLDCLRLGFNEDYARPEWMLITVLP
VPPPPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHV
ATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLD
LDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTGDRIDLRYNKR
AGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNF
IDYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKGIHLQRFDGGKDLLSP
KDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPRVCAQLFSSIQKVTNYWLLHN
GFSIGIGDTIADVSTMKDITSTISEAKIKVQEIILDAQSNKLEPEPGMTLRESFEHNVSR
VLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFS
DRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERRFRID
VLDSSKSIPESLLESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSWPLPVN
LRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQ
CLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQM
TLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPALSDDIEKAKVVQSAIE
HTSLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFSIPDEKVEESIEKQSPWLLRLELDR
AKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDEEADAEEDQ
ILKRIEAHMLESISLRGIPGITRVFMMQHKVNTPDATGEFKQGKEWVLETDGVNLADVMA
VPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVLSFDGSYVNYRHMALLVDVMTSR
GHLMAITRHGINRSDTGALMRCSFEETVEILLEAGASAELDDCRGISENVMLGQMAPLGT
GAFDVMLDDKMLQTAPSNVAVAAGNDEFADDGGATPYREYDMEDDKIQFEEGAGFSPIHT
AQVQDVSGGLTSYGGQPTSPSATSPFSYGSTSPSFGGSVSPGYGGTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPQYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPGSPEYSPNSPKTEDKKNED
NT seq 5220 nt   +upstreamnt  +downstreamnt
atgagtcgccagttcccttactcaagcgctccactccgttccgtcaaggaagttcagttc
ggcttgttgtcgccagaagaagtgcgtgccatttccgtagccaagattgaataccccgag
accatggaccagaccaccaagactcctagagaaggtggtttgaacgatcctcgtttaggt
tcaatcgacagaaactttagatgtcagacctgtggcgaggatatggccgaatgtccgggc
catttcggtcacattgagttggccaagccggtgttccacattgggttcatcgccaaaatc
aagaaggtatgtgagtgtgtatgtatgcactgcggaaagttgttgctcgatgaaaacaac
cccgccatggctcaagctatcaaaataagagaccccaagaagaggttcaacgccgtctgg
cagttgtgtaaggctaaaatggtttgtgaaaccgatatcatagaagagggagctactgaa
accacaaccagaggtggttgtggtcatactcagcccaccattcgtagagatgggttgaag
ttatggggtacctggagacataacaagaattttgaagaaaacgaacagcctgaacgtaga
ttgttgactccttcagagatcttgaatgttcttaaacatataagctccttggactgtttg
agacttggcttcaacgaggactatgccagaccagagtggatgttgatcacagttttgcct
gtgcctcctccacctgtcagaccttcgattgctttcaacgacactgccaggggggaagat
gatttaactttcaagttggccgatgttttgaaagctaacatcaatgtgcaaaggttggaa
atggacggctctcctcagcatgtgatctctgagttcgaggctttgttgcaattccacgta
gccacatatatggataacgatattgctggccagccccaggctctccagaagacaggtcgt
cctatcaaatctattagagcaagattaaagggtaaggaaggtagattgagaggtaacttg
atgggtaagcgtgtcgacttttccgctcgtaccgttatttcgggtgatccaaatcttgat
ttagaccaggttggagtaccaatttccatcgctcgaacattgtcgtaccctgaggttgtc
accccatacaatattcatagattgactgagtacgtcagaaacggtccaaacgaacatcct
ggtgccaagtacgttatcagagacaccggtgatcgtatcgacttgcgttataacaagaga
gctggtgacattgcattacaatacggctggaaggttgaacgtcacttgatggacaatgac
cctgtgttgttcaaccgtcaaccctccttgcacaagatgtccatgatggcccacagagtt
aaagttatgccatattccacatttagattgaatttgtcagtcacatcgccatataacgcc
gattttgatggtgatgaaatgaacttgcatgtacctcaatctccagagactagagctgaa
ttgtcggaaatttgcgctgtacctcttcaaattgtttctccacaatcgaataagccagtt
atgggtattgtgcaagatacgttgtgtggtattcgtaagatgaccttgcgtgacaacttc
attgattacgaccaagttatgaatatgttatactggattccgaactgggacggtgtgatt
cctcctccagctattgctaagcccaaaccattgtggaccggtaagcagttgttgtctatg
gccattccaaagggtatacacttgcaaagatttgatgggggaaaagatttgttaagtccc
aaggacaccggtatgttgattgtagatggtgagatcatgtttggagttgtcgataagaag
acggttggtgccacaggtggtggtttaattcacactgttatgagagaaaaaggccctcgt
gtgtgtgctcagcttttcagctctattcaaaaggtgaccaactactggttattacataat
ggtttctctatcggtattggtgataccattgctgatgtaagtaccatgaaagatatcact
tcaaccattagtgaggccaaaatcaaggtgcaggaaatcatcttggacgcacaactgaac
aagttggaacctgaaccaggtatgacattaagagaatcgttcgaacataacgtttctcgt
gtccttaatcaagctcgtgataccgctggtcgttccgcagaaatgaatttaaaggactta
aataacgtcaagcagatggtggtttcaggttccaagggttctttcattaatatctcgcaa
atgtctgcatgtgtgggtcaacagattgtagaagggaagagaattccctttggtttttct
gatcgtaccttgcctcatttcacaaaggatgattactctcccgagtcgaagggttttgtt
gaaaattcttacttgagagggttgactcctcaagaattcttcttccacgccatggctggt
agagaaggtcttatcgatactgccgtcaaaactgccgaaactggttatattcaacgtcgt
ttggtgaaagctttggaggatatcatggtccattacgatggtacaaccagaaactccttg
ggtgatatcattcaattcgtctatggtgaagacggtatcgatggtacccaagttgagaag
caatctgttgatactattccaggatccaacgatagtttcgaacgtcgtttcagaatcgac
gtcttggactcttcaaaatccattccagaatcattgttagaatccggcaaggaaattaag
ggtgatgtcaagttacagaaggttttggacgaagagtacaaacagctcttggatgaccgt
aagtacttaagagaagtctgtttccctaatggtgacttctcatggccattaccagtgaat
ttgcgtcgtattattcagaatgctcaacagattttccacaatggtcgttacaaggcttct
gatttgagattggatgaagttatcgttggcgttagatctctttgtgaaaaattgcttgtt
gttcgtggtgatactgaattagtcaaagaagcccaagcaaatgccacattattattccaa
tgtttggttagatctagattggcatcacgtagagtgattgaagaattcaagttgaacaga
tcttcatttgagtgggttgtgggtgaaattgaaactcaattccagaagtccattgttcac
cctggtgaaatggttggtgtgatcgcagcacagtccatcggtgaaccagccacccaaatg
accttgaacactttccattatgccggtgtgtcttctaagaacgttactttgggtgttcct
cgtcttaaggaaattcttaatgttgctaagaacattaaaactcctgcattgactgtgtac
ttagatccagcgttatctgacgatattgaaaaggccaaggttgtccaatctgcgatcgag
cacacaagtttgaaaaatgtgacttcatccacagaaatctactatgatccagatccaaga
acaactgtaatcgaagaagattacgataccgtggaagcctacttctcgattcctgatgaa
aaggtggaagaatctattgaaaagcaatctccttggttacttcgtttagaattagatcgt
gccaagatgttggataaacaattgaccatggctcaagttgctgaaaagatttcccagaac
tttggtgaagatttgttcgtcatatggtctgatgatactgctgataagttgatcattcgt
tgtcgtgtcgttagagatccaaagtctcttgatgaggaagcagatgctgaagaagatcag
atattgaagcgtatcgaagctcacatgttggaatcaatttctttacgtggtatcccaggt
atcacaagagttttcatgatgcaacataaggtcaacacccctgatgccactggtgaattt
aaacaaggaaaggaatgggtattggaaactgatggtgtcaatttggctgatgtcatggca
gttccaggtgttgactctagtcgtacctactccaataacttcattgaaatcttgtctgtt
cttggtattgaagccacacgtgcagccttgtttaaggaaattcttaatgtgctttcattc
gatggttcttatgtgaactatcgtcatatggctcttttggttgatgttatgacttctcgt
ggtcacttgatggccattacacgtcacggtattaacagatcggacaccggtgctttgatg
cgttgttctttcgaagagactgttgaaatattgttggaagctggtgcatctgccgagtta
gatgattgtcgtggtatttctgaaaacgtaatgttaggccaaatggctccattaggtact
ggtgctttcgatgttatgcttgacgacaagatgttgcaaactgctccttcaaatgttgca
gttgctgctggaaatgacgaatttgctgacgatggaggtgccactccatacagagagtac
gacatggaagatgacaagattcaatttgaagaaggagcaggtttctcgccgattcacact
gcacaagttcaagatgtttctggaggacttacttcttatggaggacagccaacttctcct
tctgctacctcgccatttagttatggaagtacttctccatcatttggaggttcagtgtcg
ccaggttacggaggaacttccccaagttattctccaacatcgccaagctactcacctact
tctccaagctactcacctacatctccaagttactctcctacgtcaccagcatattcacct
acttccccatcttactcacctacttccccaagctactcacctacttccccaagctactca
cctacttccccaagctactcacctacttccccaagttactctccaacttcgccaagttac
tcacctacttctccaagttattcgcctacttctccttcttattctcctacttctccttct
tactctcctacatctccttcttactcacctacttctccaagctactcacctacttcccca
agttactcgccaacgagtccctcatactctcctacttcgcctagttactctccaacttcg
ccaagttattcaccaacttcaccacaatactcaccaacctctcctcagtactctccaacc
tcaccactgtactcgccaacctcaccacaatactcccctacttcgccacagtattcacca
ggatctcctgaatattcgcctaattcgccaaagacggaggataagaagaacgaagactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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