KEGG   Scheffersomyces stipitis: PICST_86849
Entry
PICST_86849       CDS       T01023                                 
Symbol
DIS3
Name
(RefSeq) 3'-5' exoribonuclease required for 3 end formation of 5.8S rRNA
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_86849 (DIS3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_86849 (DIS3)
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     PICST_86849 (DIS3)
SSDB
Motif
Pfam: RNB Rrp44_CSD1 Rrp44_S1 PIN_4 OB_Dis3 CSD2 Dis3l2_C_term
Other DBs
NCBI-GeneID: 4851890
NCBI-ProteinID: XP_001387162
JGI: 86849
UniProt: A3GHZ1
Position
1:complement(3115055..3118130)
AA seq 989 aa
MIGNRKRLSSGLSVTSKVFVRSRNGGAQKIVREHYLRDDIPCYSKACKVCHDIIKTDAAG
ELPRFILSENPSKTKSGLRHYIVVDTNIILHAIDLLENVSCFYDVIVPQTVLEEVKNRSF
PIYQRLRGLVKSEDKRFIVFHNEYAEATYITRNKNESINDRNDRAIRKVASWFGTHMKTN
HSENDIGIIFICNDADNRQKARAEKIDARSLVEYFDDLPNGEDLRDLIPSDINSGVDFHN
ENEASFPEYYSNSRIMAGVKNGTLYQGMLNISSYNFLQGTVQVPAFRKPLLIVGSQNLNR
AFNSDSVIVELLPKDKWREPSTTIVEESNIGSNDNANDEDEEDVGSAGSGVVSDKERILL
AQEALKATSSSAGVQKRLQPTARVVGIMRRSWRYYVGQIAPSSVSSDDTGNASKSCFVIL
MDKVLPKIRIRTRKAKEFLGQRIVVVVDSWPADSRYPNGHFVRTLGEIESAEAETEALLL
EHDVEYRPFSKNVLDCLPEEGDNWVVPDLVNTDDPKLKKRVDLRDKLVCSIDPPNCVDID
DALHAKPLPNGNYEVGVHIADVTHFVKPNTALDQEGASRGTSVYLVDKRIDMLPMLLGTN
LCSLKPYVDRFAFSVIWELDDNANIVKVEYMKSVIKSREAFSYERAQTRIDDKSQTDELT
ESMRILLKLSKKLKQQRLDAGALNLASPEVKVHMDSETSDPNEVEIKKLLETNSLVEEFM
LLANISVARKIYDSYPQTAMLRRHAPPPATNFEQLNDMLSVRKPGLSISLESSRALADSL
DRCEDPQDPYFNTLLRIMSTRCMMAAEYFSSGSYGYPEFRHYGLAVDIYTHFTSPIRRYC
DVVAHRQLAGAIGYENLDLSHRDKNKMETIVKNINRRHRSAQFAGRASIEYYVGQVMKNN
EAEHEGYVIKCFNNGIVVLVPKFGIEGLIKLEMLGDVNTAIYDEDKYELKFTDLQGKERR
VAVFDKVNVDVKSVKDEVSGNRKAQLLLR
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgattgggaacagaaaacgattgtctagtggacttagtgtcacctccaaggtgttcgtg
aggtctcgtaatggtggagcccaaaagattgttagggaacactacttaagagacgatata
ccatgctactccaaggcatgtaaagtttgtcacgacatcatcaagacggatgcagcaggt
gagctccctcgtttcatcttgtccgagaacccaagcaagactaaatctggtttgcgccat
tacatagtagtagacaccaatatcattcttcatgccatcgatttgttggagaacgtcagt
tgtttctacgacgtaattgtgcctcagacagttttggaagaagtgaaaaatagatccttc
cctatctaccagcgacttcggggtttggtgaaatcagaagataagcgttttatcgtattt
cacaacgagtacgctgaagctacttacatcacgagaaacaagaacgagtccataaacgat
agaaacgacagagccatccggaaggtggcttcgtggttcggtactcacatgaagaccaac
cattctgaaaacgatataggaatcatttttatctgtaatgacgctgataaccgtcaaaag
gctcgtgctgagaagatagatgcccgatcccttgtagagtacttcgatgatttacctaat
ggtgaagacttaagggacttgattccaagtgatatcaacagtggagtagacttccataac
gagaatgaggcgtcatttccggagtactactcgaactcgagaatcatggctggtgtcaag
aatggtactctttatcagggtatgttgaatatctcttcgtacaactttcttcaaggtaca
gtgcaagttccagctttcaggaagccacttttgattgtcggctcccagaacctcaaccgt
gccttcaactcggattcagttatagtagagttgttacccaaagataaatggagagaacct
tctaccacgatagtggaagaaagtaacattggttctaacgacaacgccaacgatgaagat
gaagaagatgtcggttctgcaggctccggtgtagtttccgataaagaaagaattttgttg
gcccaggaagcattgaaggctacttcttcttcagcaggagtgcaaaagagacttcagcct
actgctagagttgtaggtattatgagaagatcatggagatactacgtagggcaaatcgca
ccatcttctgtttctagcgacgatactggtaatgcttccaagagctgttttgtcatcttg
atggacaaggtattgcctaagatcaggatcagaacaagaaaagccaaggagttcttaggt
cagagaatcgttgttgttgtggactcatggccagcagattctcgttatccaaatggacat
tttgtgagaactcttggtgaaatagaaagtgccgaggctgaaactgaggcattgttgttg
gaacatgatgtagagtacagacccttctccaagaatgtcttggactgtttgccggaagaa
ggtgacaattgggttgttccagatcttgtcaacacagacgatcccaagctcaagaagagg
gttgacttgagagacaagttggtatgttctatcgatccacccaactgtgtggatatcgat
gatgccttacatgcaaaaccactccccaacggcaactacgaagttggtgttcatatagct
gatgtgacccatttcgttaagcctaacacagcattagatcaagaaggtgcctctaggggt
acatctgtctacttggtggataaaagaatcgacatgttgcccatgttgttgggtactaat
ttgtgttcgttgaagccatatgtggacaggtttgccttttcagttatttgggaattggat
gacaatgctaacattgtcaaggttgagtacatgaagtcagtgatcaagtccagagaagcc
ttttcttacgaaagagcccaaacccggatcgacgataagtcacaaactgacgagttgact
gaatcgatgagaatcttgttgaagctttccaaaaagctcaaacagcagagattggatgcc
ggtgccttaaacttagcatcgccggaagtcaaggtccacatggatagtgagacgtcagat
cccaatgaggttgaaatcaagaagttattggagaccaactctcttgttgaagagttcatg
ttgttggccaacatttccgtagccagaaagatttacgattcatatccacaaactgcgatg
ttaagaagacacgcacctcctccagcaacaaatttcgagcagttgaacgatatgttgagt
gtgagaaagccaggcttgtctatttctttggagagttccagagctttggcggactcgttg
gatagatgtgaagatccacaagatccatatttcaacacccttttgcgtatcatgtcaact
agatgtatgatggcagctgagtacttctcatctgggtcgtacggatatcctgaattcaga
cactatggtttggctgtagatatctacacacattttacgtcacctatcagaagatactgt
gatgttgtagcacacagacagttggctggtgcaattggttatgaaaacttggacttgagt
cacagagacaaaaacaaaatggagacaattgtcaagaatatcaatagaagacacagaagt
gcacaatttgctggccgtgccagtattgagtactatgttggacaagttatgaaaaataat
gaagccgaacatgaagggtatgtgatcaagtgtttcaacaacggaattgttgttcttgtg
cccaagtttggcattgaaggtttgataaagcttgagatgttaggtgatgtgaacactgct
atctatgatgaagacaagtacgagttgaagttcactgatctccaaggtaaggaaagaaga
gttgcagtttttgacaaagttaatgtagatgtgaagtcagttaaagatgaagtcagtggt
aacagaaaggcgcaattacttttgcgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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