KEGG   Psychromonas ingrahamii: Ping_1668
Entry
Ping_1668         CDS       T00450                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pin  Psychromonas ingrahamii
Brite
KEGG Orthology (KO) [BR:pin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pin03016]
    Ping_1668
Enzymes [BR:pin01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     Ping_1668
Transfer RNA biogenesis [BR:pin03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    Ping_1668
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC
Other DBs
NCBI-ProteinID: ABM03461
UniProt: A1SVE6
Position
complement(2026283..2027392)
AA seq 369 aa
MQFEIITTTAQLHDFIATLDGSPISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVG
DLSSFWQAIDNKNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAKMVE
TLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQEC
QSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKADH
LWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDFPAY
KSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTGWRF
ELIGHQFEH
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgcaatttgaaataattacgacaacagcacaattgcatgattttatagcaacccttgat
ggcagcccgatttcacttgatacagaatttgtccgcacacgcacttatgcagcgaattta
ggcttgttacaaatatctcaaaatacacaaatcaccttaatcgatccgattgcggttggc
gacctatcaagtttttggcaggctattgataataaaaatataattttgcatgccagcagt
gaagatttagaaataatacgagatcataaaggtgatctcaatttcaccctttttgatacc
caaattgcatgctcttttcttaatatgggcgcttctcttggttatgctaaaatggttgaa
acattagaggccgttatcgttgacaagggtgaatcacgaacagactggtgtgcgcgtcct
ttaagcgaaaagcaaataaactatgccggcgtggacgttttatatttacaaccctgctta
gagaagctgcagcaacaacttgaaaataaaaaaatgttccctttttttgagcaagaatgc
caaagtgtacttgctcaaaaaatggtgaaacaagatcctgacaaagcctataaattgctt
aacaatttatttaaattggatcgccaaggactggctattataaaggcattagcaaaatgg
cgtttactcaccgcacaagaacgtaatcttgcgcttaactttgttgtaaaagctgatcac
ctgtggttattggcttattatcaacccacttctttagacgatctgcgtcgtttaaattta
ttgcccaatgaaattcggattcatggacaacagattttaaccattatgacccaggtaatc
agtcaagatgaaagtacttatccccctctggtgaaccgtttggttgattttcccgcttac
aaaagcacggtgaaatcaatgcgcgataaaattcagctttgcgccgaaaaatatgactta
ccccttgagttacttgcctctaaacgtgttattaacgaatatttaagctggttatggaaa
ttaaccaatctgcaaagacaaacagccaataaacccaagctgttaacgggctggagattt
gaattaatcgggcatcagttcgaacactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system