KEGG   Pirellula sp. SH-Sr6A: VN12_23210
Entry
VN12_23210        CDS       T04360                                 
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VN12_23210 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pir03019]
    VN12_23210 (pnp)
   03016 Transfer RNA biogenesis [BR:pir03016]
    VN12_23210 (pnp)
Enzymes [BR:pir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     VN12_23210 (pnp)
Messenger RNA biogenesis [BR:pir03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VN12_23210 (pnp)
Transfer RNA biogenesis [BR:pir03016]
 Prokaryotic type
  tRNA degradation factors
   VN12_23210 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase KhpA-B_KH KH_2
Other DBs
NCBI-ProteinID: AMV35055
UniProt: A0A142Y782
Position
complement(5711150..5713591)
AA seq 813 aa
MVKIRVEKQIGDSVLSFETGALAKQATSSVVCQYGDTVVFIATTTGPSRPGTDFFPLTCD
YRERFAAAGKFPGGFLKRESRPTTKETLTSRLIDRPIRPLFPDGFIDEVQVQAIVMSSDV
QNDADVLAMNGAAAALFISPLPFQGPISSCRVGKVEGKLIAFPTHAQLEESELDMIVSAN
EREVMMIEGFAQEMPEAEMLEAIKFAHDVCKQVIELQREFFDKVKPTKTTFDSPDTTELM
AKLRADYYERFKEAKQIEGKQARNEACSALKAEAVSALIPDPSAEGAICTNQLSHVWHTL
ENQVVRDLILSGRRSDGRDAKSLRPIHCETDLLPRTHGTALFQRGETQAFITVTLGTPRD
EQRVDGLVDEYSKKFMLDYNFPPFSVGECRPIRAPGRREIGHGMLAERSLEAVLPDPEDF
PYTIRVISDILESNGSSSMASVCGGCLGLMAAGVPITNPVAGISIGLVREKDQHVLLTDI
IGDEDHFGDMDFKISGTQNGITGIQLDLKIPGVSEEIIRGTLKQAREARIEILRKMLTCI
PRPRSETSRFAPRLLRTKIEPDKIGALIGPGGKNIRAIQEETGVTIDVDDEGNVTVASAD
AESAKRAIGRVEACTATVQIGKIYDGIVSSVRDFGAFVEILPGKDGLCHISELSSGYVAS
VDSVCKVGDAMKVIVIDIDDHDRVKLSRRRALEELGMEDEFAAPSEESDDLDDFGGDDLG
DDIGFDEKPERADRPERTEARTGDRGGRGRGGDRGGDRGGDRGSSGGSGGGGGGFRRGGG
RGRSRGGSGGGSGGGGGRSSGGDRGGDRGGDRR
NT seq 2442 nt   +upstreamnt  +downstreamnt
gtggtaaagattcgtgtagaaaaacaaattggcgattcggttctctcgttcgagacaggg
gctttggccaagcaagccacttccagcgtcgtatgccaatacggcgatactgtcgtgttc
atcgcgacgacgaccggcccgtcccgtccaggaactgacttcttcccgctcacatgcgat
tatcgcgaacgattcgcagcagcgggtaagtttcccggcggtttcctcaaaagggaaagt
cgcccgacgaccaaagaaacgctcaccagtcgcttgatcgaccgtcctatccgccccctc
ttcccagacgggttcattgacgaagtccaagtccaggcgattgtgatgagttcggacgtt
caaaacgacgctgacgttctcgccatgaacggcgctgcagcggctttgtttatcagtcca
cttcctttccaaggcccgatctcttcatgccgagttggcaaagtggaaggcaagctgatt
gcgttccccacccacgctcaactcgaagagagcgaactcgacatgatcgtttcggcaaac
gaacgagaagtcatgatgatcgaaggcttcgcgcaagaaatgcctgaagcggagatgttg
gaagcgatcaagtttgcacatgatgtctgcaagcaagtgatcgaacttcaacgcgagttc
ttcgataaggtcaaaccgaccaagaccacttttgattcgccagatacgaccgaactgatg
gcgaaactgcgagcggattactacgaacgcttcaaggaagcgaagcaaatcgaaggcaaa
caagctcgcaacgaagcttgctcggcgctcaaagcagaagcggtctcggctttgatcccc
gacccatccgccgaaggggccatttgtaccaaccaactcagccacgtttggcacactttg
gaaaatcaagttgttcgcgatttgattctttcggggcgacgttccgatggtcgcgacgcg
aagagtttgcgacccatccactgtgaaaccgatttgcttcctcgcacgcatggtacggct
ctgttccaacggggtgagacccaagcgttcattacggtgactcttggtacaccgcgagac
gaacaacgcgtcgacggattggtggatgagtacagcaagaaattcatgctggactacaac
ttcccgccattctccgtgggtgagtgccgtcctattcgcgcaccgggccgccgagaaatt
ggccacgggatgcttgcagaacgatccttggaagccgtgcttcccgaccccgaagatttc
ccttacacaattcgtgtgatcagcgacatcctcgagagcaatggttcgtcgtcgatggcc
agcgtttgcggtggctgtctcggattgatggcagccggggttcccatcaccaaccccgtc
gcagggatcagcatcggtcttgttcgtgaaaaagaccagcatgtactgctcaccgacatc
atcggtgacgaagatcacttcggcgacatggatttcaaaatttcgggaacgcaaaacgga
atcaccggaatccagttggatctgaagatcccaggcgttagcgaagaaatcatccgtggc
acgctcaagcaagcgcgtgaagctcggatcgaaattctccgcaagatgctgacgtgtatt
cctcgtccgcgcagcgaaaccagccgtttcgcacctcgattgcttcgaaccaagatcgag
cccgacaagatcggcgcgttgatcggtcctggtggtaagaacatccgagcgatccaggaa
gaaaccggagtgaccatcgacgtcgatgatgaaggcaatgtaactgtcgcttcggcagac
gccgagtcggcgaagcgagccatcggtcgcgtggaggcctgcacggcaacggtccaaatc
ggcaagatctatgatgggatcgtctcgagcgtacgggacttcggcgcgttcgtcgaaatc
ctccccggtaaggacggactctgccacatcagcgaactctccagcggctatgtcgcgagt
gtcgactcggtatgcaaggtcggggatgcgatgaaggtaatcgtcatcgacatcgatgat
cacgaccgcgtgaagctctcccgacgccgagcattggaagagctgggtatggaagatgaa
ttcgcagcaccatcggaagagtcagacgatctcgatgacttcggtggcgatgatctcggc
gatgacattggctttgatgaaaagccagagcgagccgatcggccagaacggaccgaagca
cgcacgggagatcgcggaggtcgcgggcgaggcggtgaccgaggcggtgaccgaggcggt
gatcgtggaagcagcggtggcagcgggggaggcggaggcggattccgacgcggtggcgga
cggggccgaagccgtggcggtagcggtggtggcagtggcggtggcggcggccggtccagc
ggtggagaccgcggtggcgatcgcggcggggaccgccggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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