KEGG   Pseudomonas knackmussii: PKB_4350
Entry
PKB_4350          CDS       T03081                                 
Name
(GenBank) putative type VI secretion system, effector protein Hcp
  KO
K11903  type VI secretion system secreted protein Hcp
Organism
pkc  Pseudomonas knackmussii
Pathway
pkc02025  Biofilm formation - Pseudomonas aeruginosa
pkc03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pkc00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PKB_4350
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02025 Biofilm formation - Pseudomonas aeruginosa
    PKB_4350
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pkc02044]
    PKB_4350
Secretion system [BR:pkc02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   PKB_4350
SSDB
Motif
Pfam: T6SS_HCP
Other DBs
NCBI-ProteinID: CDF85675
UniProt: A0A024HKW0
Position
complement(4564459..4564950)
AA seq 163 aa
MPIPPYMWLKDDGGADIKGSVDVHGREGSIEVIGLSHGVNLPVDSANGKITGTRQHSSMM
IEKEVDCSTPYFYKAAATGQTLKSAEIKFYHINDAGQEVCYYTVLMENVKITGVNCGVPN
VKLAGNDKMNHVESVSLQYEKITWLIVDGNIQYTDAWNERLTA
NT seq 492 nt   +upstreamnt  +downstreamnt
atgccaatccctccgtatatgtggttaaaggatgatggtggtgcagacattaaagggtct
gtggatgttcatggccgagaaggtagcatagaggtcatcgggttaagtcacggtgttaac
ctgccagtggacagcgccaacggtaagattactggcacgcgccagcattcctccatgatg
atcgaaaaggaagtggattgctccactccctatttctataaggccgctgcgacaggtcag
acgctaaagagcgcagaaataaagttctaccatattaacgatgcagggcaggaagtttgc
tattacaccgtcttgatggaaaatgtgaaaattaccggcgtaaactgcggtgtgcctaat
gttaagctggctggtaatgacaagatgaatcacgttgaaagcgtcagtttgcagtatgaa
aaaatcacctggctaattgtcgatggaaacatccaatatacagatgcctggaacgagcgc
ctgactgcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

Download RDF
DBGET integrated database retrieval system