KEGG   Parvibaculum lavamentivorans: Plav_3617
Entry
Plav_3617         CDS       T00580                                 
Name
(GenBank) RNA modification enzyme, MiaB family
  KO
K06168  tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
Organism
pla  Parvibaculum lavamentivorans
Brite
KEGG Orthology (KO) [BR:pla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pla03016]
    Plav_3617
Enzymes [BR:pla01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.3  tRNA-2-methylthio-N6-dimethylallyladenosine synthase
     Plav_3617
Transfer RNA biogenesis [BR:pla03016]
 Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    Plav_3617
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM
Other DBs
NCBI-ProteinID: ABS65215
UniProt: A7HZ82
Position
3872381..3873784
AA seq 467 aa
MPEAGPEAEPGSPRKKIFVKTYGCQMNVYDSARMVDVMAPSGYTEVDAPEDADIVILNTC
HIREKAAEKVYSELGRLRELKKEKSGRGEELLIGVAGCVAQAEGEEMRRRAPVVDLVLGP
QTYHRLPEYVARLANGGPGIVETEFPVDDKFASLPMAEKRKTLARGATAFLTIQEGCDKF
CTFCVVPYTRGSEFSRPVARILDEARSLVDAGVREITLLGQNVNAWHGEDQAGRPATLGY
LIRALAEIEGLARLRYTTSHPRDMDEELIAAHRDVPALMPYLHLPVQSGSDRILAAMNRR
HDADSYHRIIGRIRAAKPDIALSSDFIVGFPGETEADFEATLDLIRTVGFAQAYSFKYSP
RPGTPAATEEDQVPEEVKSERLQRLQALLGEQQLAFNAGCAGRTMPVLFDRRGRGESQLV
GRSPYLQSVHIDDAPEHLFGSLVDVVIEEGHRNSLRGRLREEAAVLA
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgccggaagcgggccccgaggccgagcccggctcgccgcgcaaaaaaatcttcgtcaag
acttatggatgccagatgaatgtctatgactcggcccgcatggtcgatgtcatggccccc
tccggctataccgaggtcgacgcgccagaagacgccgatatcgtcattctgaatacctgc
cacatccgcgaaaaggcggcggaaaaggtctattcggaactcggccgtctgcgcgagctg
aagaaggaaaagtccggtcgcggcgaggagctgctgatcggcgtggccggctgcgtcgcg
caagccgagggcgaggaaatgcgccgccgcgcgcctgtggtcgatctggtgctcggcccg
cagacctatcatcgtctgccggaatatgtcgcgcgccttgcgaatggcggtcccggtatc
gtcgagaccgaatttccggtggacgacaagttcgccagccttcccatggccgaaaagcgc
aagacgctcgcacgcggcgcaaccgccttcctcaccattcaggaaggctgcgacaagttc
tgcaccttctgcgtcgtgccctatacgcgcggcagcgagttctcgcgtcccgtcgcgcgc
atcctcgatgaagcccgttcgctggtcgatgcgggcgtgcgcgagatcacgctgctcggc
cagaacgtcaatgcctggcacggcgaggatcaggcggggcgtcccgcgacgctcggctac
ctcattcgtgcgcttgcggaaatcgaaggtctcgcgcggcttcgctacacgacgagccat
ccccgcgacatggatgaagagctgattgccgcccatcgcgacgtgccggcgctgatgccc
tacctgcatctgcccgtccagtcgggatcggaccgtatccttgccgcgatgaaccgccgt
cacgatgcggatagctaccatcgcatcatcggccgcatccgcgccgcgaagccggacatc
gccctctcatccgatttcatcgtcggctttcccggcgagacggaagcggatttcgaggcg
acgctcgatctcatccgcaccgtcggcttcgcgcaggcctacagtttcaaatacagcccc
cgtcccggcacgcccgccgcgaccgaggaagatcaggttcccgaggaagtgaagagcgag
cgcctgcagcgtcttcaggcccttctcggcgaacagcagcttgccttcaatgcgggatgc
gccggccgcaccatgccggtccttttcgaccggcggggccgtggcgaaagccagcttgtc
ggccgcagtccctatcttcagtcggtacatatcgacgatgccccggaacatctcttcggc
agccttgttgatgttgtgatcgaggaaggacatcgaaacagcctgcgagggcgtctccgc
gaggaagcggccgttctcgcctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (61)   

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