KEGG   Candidatus Planktophila dulcis: A1s21155_05725
Entry
A1s21155_05725    CDS       T05051                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
plak  Candidatus Planktophila dulcis
Pathway
plak03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:plak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A1s21155_05725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:plak03021]
    A1s21155_05725
   03400 DNA repair and recombination proteins [BR:plak03400]
    A1s21155_05725
Enzymes [BR:plak01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A1s21155_05725
Transcription machinery [BR:plak03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A1s21155_05725
DNA repair and recombination proteins [BR:plak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A1s21155_05725
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: ASY12436
Position
complement(1109365..1113171)
AA seq 1268 aa
MLDVNFFDELRIGLASAQNIRDWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDAEAREEDMPQLEKKLANDRKKIETKRDVDLDTRTKKLEAD
IAELESEDAKSDVKRKVRESAERELKAIRERSERELARLEDVWSRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKRRLETFDLETEHAMLTDLSENGKGAKKTRAIKRLKVVN
AFMTTTNHPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITSPTQDMVLGLYYMTMEREAELGEGR
AFGSIAEAIMAHDQHSVSLQAKVKIRVKGETLETTIGRALFNEALPDDFPFVDHDVTKKA
LGAIVDKLAEFYPKVTVAQTLDALKSLGFHWATRAGVTIGIEDVVTPPRKREILDGYETQ
ADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKSMEDNFPRLNPVWMMVFSGARGNMM
QIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADSGY
LTRRLCDVAQDVIIREEDCGTDRGLALPIAIRQQAGNLVKHDHVETSVYGRTLAEDIEVN
GEVLAKAGSDLGDRVIDALVAAGVDEVKIRSVLTCDSKVGQCAACYGRSLAAGQLVAVGE
AVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAEAAGV
VSFREDAKGKKIIVTPDDGGEEVAYPITRRQKLLVEEGTRVEVGQKMVVGAIDPKQVLRI
LGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDTEMLPGELVERG
RFEAENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKSDP
LLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFDQGGSGEAVR
LDEVEIPR
NT seq 3807 nt   +upstreamnt  +downstreamnt
atgttagatgtcaacttctttgatgaactacgaatcggtcttgcatcggctcaaaatatt
cgtgattggtcatttggcgaagtaaagaagccagagacaatcaactaccgcacactcaag
ccagagaaggacggactcttcgatgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggcaagtacaagcgcgttcgatttaagggaatcatctgcgagcgttgcggtgtt
gaagtaacacgcgcaaaggttcgtcgcgaacgtatgggtcacatcgagcttgcagctcct
gttactcacatctggtacttcaagggtgttccatcacgccttggatatctccttgacctt
gctccaaaggatcttgagaaggttatctatttcgctgcttacatgatcacagaagttgat
gctgaagctcgtgaagaagatatgccacagcttgagaagaagcttgctaacgatcgtaag
aagatcgagacaaagcgcgatgtagatcttgatactcgtaccaagaagctcgaggcagat
attgctgaactcgaatctgaagatgcgaagtcagatgtgaagcgcaaggttcgtgaatct
gcagagcgtgagctcaaggcaatccgcgagcgttcagagcgcgaactcgcacgtcttgaa
gatgtctggtcacgcttcaagaaccttaaggttcaagatctcgaaggtgatgagaacctc
taccgcgagatgcgtgatcgctacggcatgtacttcaagggagatatgggtgctgctgca
attaagcgtcgcctagaaactttcgaccttgagacagagcatgcaatgctcactgatctt
tctgaaaatggaaagggcgcaaagaagactcgcgctatcaagcgcctgaaggttgtcaac
gcatttatgacaactacaaaccacccagcatcaatggttctcgattgcgtaccggttatc
ccacctgatctgcgcccaatggttcagctcgatggtggacgctttgcgacttcagatctg
aatgatctctatcgccgcgttatcaaccgtaacaatcgtttgaagcgtcttgctgatctc
ggtgctccagagatcatcgttaacaacgaaaagcgtatgttgcaggaagctgtagatgcg
ttgttcgataacggtcgtcgtggtcgtccagtaactggcccaggaaaccgtgcgctgaag
tcactgtcagacatgctcaagggtaagcagggacgtttccgtcagaacttgctcggaaag
cgcgttgactactcaggtcgttcagtaatcgttgttggtccacagttgaagttgcaccag
tgcggtctgccaaagcagatggctcttgagctctttaagccattcgtaatgaagcgtctt
gtagaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtatgggatgttcttgaagaagtaattgcagaacatccagtgcttctgaaccgc
gctcctacacttcaccgtttaggtatccaggcatttgaaccacagctggttgaaggtaag
gcaattcagattcacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgtccaccttccattgtctgcagaagctcaggctgaagcacgcatcttgatgtta
tcttcaaataacatcttgtcaccagctaacggtcgtccaatcacatctccaacacaggac
atggttctcggtctttattacatgactatggaacgtgaagcagagcttggtgaaggtcgc
gcattcggatctatcgctgaagcaatcatggctcacgatcagcactctgtttcattgcag
gcaaaggtcaagattcgcgttaagggagaaactctcgagacaacaatcggccgcgcactc
tttaatgaagcacttcctgatgatttcccattcgttgatcacgatgtaactaagaaggct
ctcggcgcaatcgtcgacaagcttgctgagttctatccaaaggtcaccgttgcacagaca
ctcgatgcactgaagtcactcggtttccactgggcaactcgtgctggcgtaacaatcggt
atcgaagatgttgtaacacctcctcgtaagcgtgaaatcctcgacggctatgaaacacaa
gctgacaaggttcaatcacagtacgaaaagggcctcatcacagatgacgagcgtcgccag
gaactcattgagatctggaccaaggcaacagctgaagttggaaagtcaatggaagataac
ttcccacgtctgaacccagtctggatgatggtcttctcaggtgctcgtggaaatatgatg
cagattcgtcagatcgcaggtatgcgcggactcgttgcaaacccaaagggtgaaattatt
cctcgcccaattaagtccaacttccgtgaaggcttgtctgtccttgagtacttcatctct
acacacggtgctcgtaagggtcttgcagatacagcgcttcgtaccgctgactctggttac
ctcacacgacgtctctgcgacgttgcacaagatgtgattattcgcgaagaagattgtgga
accgatcgtggtctcgcacttccaatcgctatccgtcagcaagctggcaaccttgttaag
cacgatcacgttgaaacatctgtctatggccgcacattggctgaggacattgaagtcaac
ggtgaagttcttgctaaggctggctcagatcttggtgaccgcgtcatcgatgcacttgtt
gcagctggagtagatgaagtaaagattcgctcagttcttacttgcgatagcaaggtcgga
cagtgcgcagcttgctacggtcgctcacttgctgcaggtcaactcgttgcagttggtgaa
gcagtcggaattatcgctgcacagtcaatcggtgaaccaggtacacagctcacaatgcgt
accttccacactggtggcgttgcaggtgatgacattactcacggtcttccacgtatcgtc
gagctcttcgaagcgcgtacacctaagggtgttgcgccaatcgcagaagctgcaggcgtt
gtgtcattccgtgaagatgcaaagggtaagaaaatcatcgtaacccctgatgatggtggc
gaagaagttgcttacccaatcacacgccgtcagaagctacttgtagaagaaggaacacgc
gttgaagttggccagaagatggtcgtcggcgcaattgatccaaagcaggtacttcgtatc
cttggaccacgtgcaactcaggttcacttggttaacgaaatccaatctgtttaccgctca
cagggcgtaggcattcacgataagcacatcgaagtaatcgttcgccagatgcttaagcgc
atcacagttcttgaagctggcgatactgaaatgcttccaggtgaactcgttgaacgcggt
cgctttgaagctgaaaaccgtcgcgttgttacaaccggtggcaaggctgcatctggtcgc
ccagaacttatgggtatcaccaaggcatcacttgcaacagagtcatggttgtcagctgct
tcattccaggaaacaactcgcgtgcttacagatgctgcgctctctgagaaatctgatcca
ctcttgggtcttaaggagaacgtcatcatcggtaagttgattccagcaggtacaggcctt
gcccgttaccgcaatatccgagttgagccaacggaagaggcaaaggcagcggtttacgca
gcttatgacgagtatgacttcacaccatttgatcaaggtggttcaggtgaagcagttcgc
cttgatgaagtggagattcctcgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system