KEGG   Plantactinospora sp. BB1: C6W10_12235
Entry
C6W10_12235       CDS       T05391                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
plat  Plantactinospora sp. BB1
Pathway
plat03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:plat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C6W10_12235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plat03400]
    C6W10_12235
Enzymes [BR:plat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C6W10_12235
DNA repair and recombination proteins [BR:plat03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C6W10_12235
SSDB
Motif
Pfam: LigD_N DNA_ligase_A_M Trypan_PARP
Other DBs
NCBI-ProteinID: AVT41413
UniProt: A0A2R4FV75
Position
complement(2818212..2819321)
AA seq 369 aa
MGDRLDEYRRRRDRARTPEPVPEPEPDAEPTAVRAGNRFVIQQHHARALHWDLRLERDGV
LASWAVPRGLPREPGRSHLAVHTEDHPLEYLEFSGEIPAGEYGGGRMTVFDRGAYTCEKW
RDDEVLVVLRGGRVSGRYVLFRAARGGGSDRAGARGGTGRGERDWMVRRLDPAPPGWQSM
PDRVRPMLAATAAKLPADDAEWGYEMRWDGLRAIGYVSGGRLRLRSADDDDLGSAYPQLR
ELAERLAPTEAVLDGELVDFDRAGRVRRAAPRPGGQRSPGRDGSQYLIFDLLWLEGTSCL
DLPYAQRRELLDGLALAGPHWQTPPYFPGGGRYALDASREQGLAGVLAKRLDAGYLPGRR
GRQWLAVDN
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgggtgaccggctggacgagtaccggcgcaggcgcgaccgggcgcgcaccccggaaccg
gtgccggagccggagccggacgcggagccgaccgccgtgcgggccgggaaccggttcgtc
atccagcagcaccacgcccgggcgctgcactgggacctgcggctggagcgggacggggtg
ctcgcctcctgggcggtgccgcgcgggctgccgcgcgagcccggacgcagccacctcgcg
gtgcacaccgaggaccacccgctggagtatctcgaattctccggcgagatcccggccggc
gagtacggcggcggccggatgaccgtcttcgaccggggcgcctacacctgcgagaagtgg
cgcgacgacgaggtgctggtggtgctgcgcggcgggcgggtctccggccgctacgtgctg
ttccgggcggcccggggcggcgggtcggaccgggccggcgcccggggcggcaccgggcgc
ggcgagcgggactggatggtccgccggctcgacccggcgccgccgggctggcagtcgatg
ccggaccgggtccgcccgatgctcgccgcgaccgcggcgaagctgcccgccgacgacgcg
gagtggggttacgagatgcgctgggacggcctgcgggccatcgggtacgtctccggcggc
cggctccggctccgctccgccgacgacgacgacctcggctcggcgtacccgcagttgcgg
gagctggccgagcggctggctcccaccgaggcggtactcgacggcgagctggtcgacttc
gaccgggccggccgggtacgccgggcggcgccccgcccgggcggccagcgcagcccgggg
cgggacggcagccagtacctgatcttcgatctgctctggctggaggggacgagctgcctc
gacctgccgtacgcccagcgccgggaactcctcgacggcctggctctcgccggcccgcac
tggcagacgccgccgtacttccccggcggtggccggtacgccctcgacgccagccgcgag
caggggctggccggcgtgctggccaagcggctcgacgccggctacctgccggggcggcgc
ggccggcagtggctcgccgtcgacaactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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