KEGG   Planctomyces sp. SH-PL62: VT85_20115
Entry
VT85_20115        CDS       T04401                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
plh  Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:plh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:plh03032]
    VT85_20115 (topA)
   03400 DNA repair and recombination proteins [BR:plh03400]
    VT85_20115 (topA)
Enzymes [BR:plh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     VT85_20115 (topA)
DNA replication proteins [BR:plh03032]
 Prokaryotic type
  DNA Topoisomerases
   VT85_20115 (topA)
DNA repair and recombination proteins [BR:plh03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      VT85_20115 (topA)
SSDB
Motif
Pfam: Topoisom_bac zf-C4_Topoisom Toprim Zn_ribbon_recom DUF693 Toprim_4
Other DBs
NCBI-ProteinID: AMV39749
UniProt: A0A142YKQ8
Position
5135892..5138663
AA seq 923 aa
MPPKSSPNSTPEDGDSPKPKAAKTPKAPKASSAKDAKPATPKAPKAPKAAKTPKAPKAAA
AKGTRAKSSTASLGVPGSGPSLVIVESPKKAKSINKFLGSRYIVKASMGHVRDLPKRKLG
LDVANGYAPSYEVVPTKKDTIGELRRDAARAEIIYLATDPDREGEAIAWHLQHALELPDD
RVRRVTFHEITERAVRDAFTKVGPINMDMVNAQQARRFLDRFVGYQLSPLLWKKVARNLS
AGRVQSVATRLIVDREREIRAFVQEEFWRITANVSPAGSTKEDERFDAQLAEYEGKKFEA
KTEADAQRVRDVLASAPYVVSKVDEAEKLDRPDAPFKTSTLQQQAAIRLRFSGKKTMKLA
QELYEGIDVDGSGPTGLITYMRTDSLRVSEEAVASVRDLIKDRYGDRYLPAKANRYAAGK
NAQEAHEAVRPTDLALTPERVRDRLGHDQHRLYQMIYNRFVASQMTPAVFTVTDVVIEAG
PGLFKAQGKILRFDGHRRLWASSGKQEDALLPPINVGQSLDLQALEATQHFTQPPPRYSE
ATLIKALEKENIGRPSTYAPIIQTIQDRKYVEHKDRRFFATELGMVVTDVLVKHFPKILD
LKFTARMEDELDEVATAKEDMIKVLDEFYHPFQEALKAAETQMERVQIATDEVCHVCGAP
MVMKFGRTGEFLGCSKYPDCKATRPIGGQPRAEAVESGHDCPKCGKPLLIRENKKGEKFL
SCSAYPECKESFDIGADGNPVPKLVETEHKCEKCGKPMALRNGRRGPFLGCTGYPKCRNI
VAVDAEGNPLPTLKIDLKCEKCGKPLAVRQGKRGAFLGCTGYPKCRNAVPVPDELKDEVA
KMAPPPPAATGPDLKSIPIEETCDDCGGPMIPRKGRRGYFLGCAKYPKCKGTKEPSAETL
EKINTALASAEAAASAEAAEVAE
NT seq 2772 nt   +upstreamnt  +downstreamnt
gtgccgccaaagtcctcccccaactcgacgcccgaagacggcgactcccccaagcccaag
gcggccaagacgccgaaggcccccaaggcgtcgtcggccaaggacgccaagcccgcgaca
cccaaagcgccgaaggctcccaaggcggccaagacgccgaaggcccccaaggcggccgcc
gccaaggggacgcgggcgaagtcgtcgaccgcgagcctgggcgtccccggcagcggcccg
tcgctggtgatcgtcgagagcccgaagaaggccaagtcgataaacaagttcctgggctcc
cgctacatcgtgaaggcgagcatgggccacgtccgcgacctccccaagcgcaagctgggg
ctggacgtggccaacggctacgccccgtcctacgaggtggtcccgaccaagaaagacacg
atcggcgagctgcggcgggacgccgcgcgggccgagatcatctatctggcgaccgacccc
gaccgcgagggggaggccatcgcctggcacctccagcacgcgctggagctgcccgacgat
cgggtccgccgcgtcaccttccatgagatcaccgagcgggccgtgcgggacgccttcacc
aaggtcggcccgatcaacatggacatggtcaacgcccagcaggcccggcggttcctcgac
cggttcgtgggctaccagctcagcccgctgctctggaagaaggtggcccgcaacctgagc
gccgggcgggtccagtcggtcgccacccggctgatcgtcgaccgcgagcgggagatccgg
gcgttcgtccaggaggagttctggcggatcaccgccaacgtctcccccgccggctcgacc
aaggaagacgagcggttcgacgcccagctcgccgagtacgaggggaagaagttcgaggcc
aagaccgaggccgacgcccagcgggtccgcgacgtcctggcgtcggcgccctacgtcgtc
tccaaggtcgacgaggccgagaagctcgaccggcccgacgccccgttcaagacgagcacg
ctccagcagcaggccgcgatccggctccgcttctcgggcaagaagacgatgaagctggcc
caggagctgtacgagggcatcgacgtcgacgggtcggggccgacggggctcatcacctac
atgcgtaccgacagcctgcgggtgtcggaggaggccgtcgccagcgtccgcgacctgatc
aaggaccgctacggggaccgctacctccccgccaaggccaaccgctacgccgccggcaag
aacgcccaggaggcccacgaggccgtccgcccgaccgacctggcgctcaccccggagcgg
gtccgcgaccgcctgggccacgaccagcaccggctctaccagatgatctacaaccggttc
gtcgccagccagatgacgccggccgtcttcaccgtgaccgacgtcgtcatcgaggccggg
ccggggctgttcaaggcccaggggaagatcctccggttcgacggccatcgcaggctctgg
gcctcgtccggcaagcaggaagacgccctcctgccgccgatcaacgtcggccagagcctg
gacctccaggccctggaagccacccagcacttcacccagccgccgccgaggtacagcgaa
gccacgctgatcaaggcgctcgaaaaggagaacatcggccggccgtccacctacgcgccg
atcatccagaccatccaggaccgcaagtacgtcgagcacaaggaccggcggttcttcgcg
accgagctgggcatggtcgtcacggacgtcctggtcaagcacttccccaagatcctggac
ctgaagttcacggcccggatggaggacgagctcgacgaggtcgccaccgccaaggaggac
atgatcaaggtcctcgacgagttctaccacccgttccaggaggccctcaaggcggccgag
acccagatggaacgggtgcagatcgccaccgacgaggtctgccacgtctgcggcgcgccg
atggtcatgaagttcggccggaccggcgagttcctgggctgctcgaaataccccgactgc
aaggcgacccggccgatcggcggccagccccgcgccgaggccgtcgagagcggccacgac
tgccccaagtgcggcaagccgctcttgatccgcgagaacaagaagggggagaagttcctc
tcctgctcggcctaccccgagtgcaaggagtcgttcgacatcggggccgacgggaacccc
gtccccaagctcgtggagaccgagcacaagtgcgagaagtgcggcaagccgatggccctg
cggaacggccgccgcggcccgttcctgggctgcaccggctaccccaagtgccgcaacatc
gtggccgtcgacgccgaggggaaccccctgccgaccctcaagatcgacctcaagtgcgag
aagtgcggaaagcccctggccgtccgccagggcaagcgcggggcgttcctgggctgcacc
ggctaccccaagtgccgcaacgccgtccccgtcccggacgagctcaaggacgaggtcgcc
aagatggccccgcccccgccggccgccaccgggcccgacctcaagtcgatcccgatcgag
gagacctgcgacgactgcggcgggccgatgatcccccgcaagggccgccggggctacttc
ctcggctgcgccaagtatcccaagtgcaaggggaccaaggagcccagcgccgagaccctg
gagaagatcaacaccgcgctcgcctcggccgaggccgccgcgtcagccgaagcggccgag
gtcgccgaatga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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