KEGG   Planctopirus limnophila: Plim_3011
Entry
Plim_3011         CDS       T01225                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
plm  Planctopirus limnophila
Pathway
plm03030  DNA replication
plm03410  Base excision repair
plm03420  Nucleotide excision repair
plm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:plm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Plim_3011
   03410 Base excision repair
    Plim_3011
   03420 Nucleotide excision repair
    Plim_3011
   03440 Homologous recombination
    Plim_3011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:plm03032]
    Plim_3011
   03400 DNA repair and recombination proteins [BR:plm03400]
    Plim_3011
Enzymes [BR:plm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Plim_3011
DNA replication proteins [BR:plm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Plim_3011
DNA repair and recombination proteins [BR:plm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Plim_3011
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Plim_3011
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 PIN_9 HHH_5
Other DBs
NCBI-ProteinID: ADG68833
UniProt: D5SSA9
Position
3896159..3899032
AA seq 957 aa
MNSPGTESTKDTAVPTIPRERAWLIDVFGVMFQVFHAIPPMTSPAGQPTNAVFGFCRDLL
WLIEKQKPTWLICAMDSPGPGIRESWYPEYKANRTEMPEDLRPQIPLLKEVFEAFGLPII
QQDGWEADDVLASLAAQFARHGTDVAIVTNDKDARQLLTPQIQIYNLRKMTWFNEASLLE
EWGIRPDQVVDFQGLVGDAVDNVPGVPLVGPKKAAALLQQFETLEGVLAHADQAPGAKLK
ENLKNFAEQARLSQKLVRLNTELQLDFDPEAGRHFRPDVEKLQALFRRLGFRKLVDEAAR
VLGQVPSSAASTTQNSATTTPSLNDGNPAENSLFSAPENNTVVPSKPLQRLERTWEMVNT
PEGLAALSRQLPLLTQICIDLETTGLDPLRDEIVGWAIAWAAQHGQPGRAVYLPVLGPPG
SVLLDGTAVVQTLKPILENPQCQLINQNVKFDLLAMRKVGIRPATIGLDTMVGDYLLDAG
ARSHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERVAEYATEDAELVVRMAPII
ESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARLMSEIHEL
AGREFNIDSPMQLRKILFEELKLPVQKKTKTGPSTDQEVLELLAPLHPLPAKITEHRHLT
KLKGTYLDALPLLVHPQSGRIHTSFNQVVAATGRLSSSDPNLQNIPIRTPEGSRIRRAFV
SCDPEWRLVCADYSQIELRMLAHFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDM
RRIAKAVNFGVMYGQSPYGLSAALGISREAATTFIDEYFTRYAGVTTFMENVLDECLATG
YARTILGRRRPIEGVRGPRERNRNRNMAERTGINTVIQGSAADLIKMAMIRVHHRLEREN
HPGQLLLQIHDELVLEAPAHLAEELGALVSEEMTKALPLDVPLEVDVAIGTNWLDAQ
NT seq 2874 nt   +upstreamnt  +downstreamnt
atgaattctccaggcacagagagcactaaagacaccgctgttcccacaatacccagggaa
cgcgcctggctgatcgatgtgttcggcgtcatgttccaggtgttccatgccatcccgccg
atgaccagccctgctggtcagccaaccaatgcggtctttggcttttgccgcgatctcctg
tggctcatcgaaaagcagaagcccacctggctcatctgcgccatggatagcccgggcccc
gggattcgcgaatcgtggtatccagaatacaaggcaaatcgtaccgagatgcccgaagat
ctcagaccacaaatccctctcctgaaagaggttttcgaagcctttggactccccatcatt
cagcaggatggctgggaagctgacgacgtactcgcttcgctggctgcacaatttgccagg
catggaacagatgtcgccattgtcacgaatgataaagatgcccgccaactcctgacgccg
caaattcagatctataacctcaggaaaatgacctggttcaacgaagcctccttgctcgaa
gagtggggcatcaggcctgatcaggtagtggactttcaaggactggtcggggatgccgtc
gataacgtacccggtgtgccgctggtcgggcccaaaaaggcagcggctctcttgcagcag
tttgagactttggaaggggttctggcccatgccgatcaggccccgggtgccaagctgaaa
gaaaacctgaagaactttgcggaacaagcccggctcagccagaaactcgtccggctcaac
acagaacttcaactcgattttgacccggaagcgggccgacacttccgtcccgatgtagaa
aagctgcaggcactgttccggcgcttaggcttccgtaaactggtcgatgaagccgccaga
gtcctgggacaggttccatcctccgcagcgagcacaactcaaaattcggcgaccactaca
ccatcgttgaatgatgggaatcctgctgagaattcactcttctcagcgcctgaaaacaac
actgtggtaccatccaagcctttacaaaggctggagcgaacctgggaaatggtgaacact
ccggaaggactcgcagcgctctcccggcaattgccattgctcacgcaaatctgcatcgat
ctggaaacaaccgggctcgaccctttgcgagatgaaatcgtgggctgggccattgcctgg
gcagcccagcatggccagccaggcagggcggtttatctgcctgtcctcgggcctccagga
agcgtgctgcttgacggaactgcagtcgttcagacgctcaagcccattctcgaaaatccc
caatgccaactgatcaatcagaatgtgaagtttgacctgctggccatgcgcaaggtgggg
attcgacccgccaccatcgggctggacaccatggtgggtgactacctgctcgatgcggga
gcgcgttcgcataacttggaagttctggggcaaaagtatctctctgccgccacgattccg
atctcggatctgctgggaagtggcaaaaaccagaagaccatgaatcagatcgagatcgag
cgcgtcgccgagtatgccaccgaagatgctgaactggtcgtgcgcatggcacccatcatt
gaatcacaactccaggaggctggactttggaagctgtacgatgaagttgaaaagccgctg
attccggtactggccgatatggagttcaaagggatcaaggtcgatgtccctgaactcgaa
cggcagagccaggagctatcgatcacgctggcccggttgatgtccgaaattcatgaactg
gcgggccgggagttcaatatcgattcccctatgcaattgcgaaaaatcctctttgaagaa
ctaaagctgccagttcaaaagaaaaccaagactggccccagtaccgatcaggaagtgctc
gaacttctggcacccttgcatcctttgcctgcgaaaattaccgagcacaggcatctgacc
aagctcaaagggacatacctcgatgcactgccactcctggttcatccgcagtcggggcgt
attcatacctcgttcaatcaggtggtggctgcgaccggccggttaagttccagcgatccg
aatctgcagaatatccctattcggactccagaagggagccgcattcgcagggcctttgtt
tcgtgcgacccggagtggcgacttgtctgtgccgattactcgcagatcgaactacgcatg
ctggcccatttcagccaggatccggcactggtttccgcttttgaacacggtgaggacatc
catcgcctcgtggcggctcaagtgcatcaggtggccctggaagatgtcaccagtgacatg
cgccgcattgcgaaagcggtgaatttcggcgtgatgtacggccagagcccttatggtctc
agtgccgcactcgggattagccgagaagccgccacgacttttatcgatgagtattttacg
aggtatgcaggtgtcacgacctttatggaaaacgtgctcgatgaatgcctcgcaactggc
tatgcacggacaatccttggtcgccgccggcccattgagggagtacgcggcccccgtgaa
cgcaatcgaaatcgaaacatggccgaacgcacggggatcaacacggtaattcaagggtca
gctgctgatctgatcaaaatggcgatgattcgagttcatcatcggctcgaacgcgagaat
catccggggcaacttctgttacagattcatgatgaactcgttctcgaagctcctgctcat
ctggcagaagagttgggtgccctcgtcagtgaagaaatgacaaaggccttacctttggat
gtcccactggaagtggatgtggccattggtaccaactggctcgacgctcaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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