KEGG   Prauserella marina: BAY61_06250
Entry
BAY61_06250       CDS       T04988                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pmad  Prauserella marina
Pathway
pmad03030  DNA replication
pmad03410  Base excision repair
pmad03420  Nucleotide excision repair
pmad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BAY61_06250
   03410 Base excision repair
    BAY61_06250
   03420 Nucleotide excision repair
    BAY61_06250
   03430 Mismatch repair
    BAY61_06250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmad03032]
    BAY61_06250
   03400 DNA repair and recombination proteins [BR:pmad03400]
    BAY61_06250
Enzymes [BR:pmad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BAY61_06250
DNA replication proteins [BR:pmad03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BAY61_06250
DNA repair and recombination proteins [BR:pmad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BAY61_06250
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BAY61_06250
   MMR (mismatch excision repair)
    DNA ligase
     BAY61_06250
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BAY61_06250
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH BRCT_2 Auto_anti-p27
Other DBs
NCBI-ProteinID: ASR34650
UniProt: A0A222VL47
Position
1378619..1380766
AA seq 715 aa
MSSEDLAAVAGTDQVAEDIADVPAQVRERHAALADEIRGHQFRYYVLDSPTVSDGEFDRL
LRDLEALEAEHPGLETPDSPSQNVGGMFSTDFTAHDHLERMLSLDNAFDFDELRAWIDRV
EREVGGQPRYLCELKIDGLAINLLYENGKLTRALTRGDGRTGEDVTLNMRTLQDLPDELT
PGSGYGIPSLIEIRGEVYFRVEEFAALNAGLVDAGKPPFANPRNAAAGSLRQKDPKVTRT
RPLRLICHGFGKRSGFDPQRQSEAYDALVAWGMPVSQYSKVIDTPQGLIDHIEYWGEHRH
DAEYEIDGVVIKVDEVSLQRRLGATARAPRWAIAFKYPPEEATTQLLDIRVNVGRTGRVT
PYAVMEPVKVAGSTVAMATLHNAEEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDVRTGD
EREFVMPAHCPECGTRLAHQKEGDVDIRCPNARSCPAQLRERVFHLAGRGAFDIEVLGWE
AAGALLQAGAITDEGDIFDLDADKLASVDLFVTKAGEMSANGQRLLANLDSAKDRPLWKV
LVGLSIRHVGPTAAQALAREFGSVERIDDATEEQLADVDGVGPTIATAVVEWFAVDWHRE
IVEKWRSAGVRMEEERDTSIPRNLEGLSIVVTGSLETFSRDEAKELIMARGGKAAGSVSK
KTAFVVVGEAPGSKYEKAVQLKVPVLDENGFRVLLERGPDAAREVAELAGEEGES
NT seq 2148 nt   +upstreamnt  +downstreamnt
gtgagcagtgaagacctcgcggccgttgccggtacggatcaggtggccgaggacatcgcc
gatgtcccggcccaggtgagagagcgccatgccgcgctggccgacgagatccgggggcac
cagttccgctactacgtgctcgactcgccgaccgtgtccgatggcgaattcgaccggctg
ctccgtgacctcgaagcgttggaggccgagcatccgggactggagacgcccgactcgccg
agccagaacgtcggcggcatgttctccaccgacttcacggcgcacgatcacctcgaacgc
atgctgagtctcgacaacgcgttcgacttcgacgaactgcgggcctggatcgacagggtc
gagcgcgaggtcggcgggcagcctcggtacctgtgcgagctgaaaatcgacgggctcgcc
atcaaccttctttatgagaacggcaagctgaccagggcgctcaccaggggtgatgggcgg
accggcgaggacgtcacgctcaacatgcgcaccttgcaggacctgccggacgagctgacg
cccggctccgggtacggcattccgtcgctgatcgagatcaggggcgaggtgtacttccgg
gtcgaggaattcgccgcgctcaacgctggtctcgtcgatgccggaaagccgccgttcgcc
aaccctcgcaacgccgcggctggatcgttgcggcagaaggatcccaaggtcaccaggacg
aggccgctgcggctgatctgccacggattcggcaagcggtcgggattcgacccccagcgc
cagtccgaggcatacgacgcgcttgtggcgtggggcatgccggtttcccagtacagcaag
gtcatcgacaccccgcaggggctcatcgaccacatcgagtactggggcgagcaccggcac
gacgccgagtacgagatcgacggcgtggtgatcaaggtcgacgaggtttccctgcaacgc
cgcctcggagccaccgcccgcgcgccccgctgggccatcgcgttcaagtacccgccggag
gaggccacgacccagctgctggacatcagggtcaacgtcggccgcaccggcagggtcacg
ccgtacgcggtgatggagccggtcaaggtcgccggttcgaccgtcgcgatggccaccctg
cacaacgccgaggaggtcaagcgcaagggcgtgctcatcggcgaccgggtggtcatccgc
aaggcgggcgacgtgatccccgaggtcctgggcccggtcgtcgacgtgcgcacgggtgac
gagcgcgaattcgtgatgcccgcgcactgtcccgaatgcggtacccggctcgcgcaccag
aaggagggcgacgtcgacatccgctgccccaatgcgcgctcgtgccccgcgcagctcagg
gagcgcgtgttccacctcgccggaaggggcgccttcgacatcgaggtcctcggctgggag
gcggcgggagcgctgctacaggcgggtgcgatcaccgacgagggcgacatcttcgacctc
gacgcggacaagctcgcgagcgtcgacctcttcgtcaccaaggcgggtgagatgtccgcc
aacggacagcggttgctcgccaacctcgactccgccaaggaccgtccactgtggaaggtc
ctggtgggcctctcgatccggcacgtcggtcccaccgcggcgcaggcgctggcgagggaa
ttcggctccgtcgaacgcatcgacgacgcgacggaggagcaactggccgacgtggacggt
gtcggtcccaccatcgccaccgccgtcgtcgaatggttcgccgtcgactggcacagggag
atcgtcgagaagtggcggagcgcgggggtgcgcatggaggaggagcgcgacacctccatc
ccccgcaacctcgaaggactgtccatcgtggtcaccggctccctggagaccttctcgcgc
gacgaggcgaaggaactcatcatggccaggggtggcaaggccgccggctcggtgtccaag
aagaccgccttcgtcgtcgtcggcgaggcaccggggtcgaagtacgagaaagcggtgcag
ctcaaggtgcccgtgctcgacgagaacgggttcagggtgttgcttgagcgcggcccggac
gcggcccgcgaggtcgccgaactcgcgggagaggagggcgagtcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (34)   

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