KEGG   Parus major (Great Tit): 107206168
Entry
107206168         CDS       T04864                                 
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X6
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107206168 (PATL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmaj03019]
    107206168 (PATL1)
Messenger RNA biogenesis [BR:pmaj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107206168 (PATL1)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     107206168 (PATL1)
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 107206168
NCBI-ProteinID: XP_015487223
Ensembl: ENSPMJG00000006943
Position
5:7034668..7042729
AA seq 764 aa
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
GSSREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGLNS
SIWDSSAVLRRIRGPLLAQEMPPVSVLDYALPQRPPQARDEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPTPYGERMSPNQLCNVPNS
SLLGHPFPHSVPPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQTQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPFL
APEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATRELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq 2295 nt   +upstreamnt  +downstreamnt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagatgccttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacaccttcggggccggg
gccgtcgatgatgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
gggtcgagccgggagccggacggtcccgttgggaatgacggggatgttttgggtgatccc
gaggacgcgctggccgagcggctcacgcgacttgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggaccccccacagcagcctggagggctgaattcc
agcatctgggacagttcagctgtgctgcggcgcatccgggggccgctcctcgctcaggag
atgccgcccgtgtccgtgctggattatgcccttccccagaggcctccgcaggctcgggat
gaggagcgggatccatcggagcgggcactgccccggcgctcctcgtcccccatcatcggc
agccccccggtccgggccgttcccatcggcacccccccgaaacaggccgccatcccaaac
ttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccactccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagtgtccctcccgttctcacgcacctgcagaga
gcccagctgcttggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtg
tccgggttggtggggagcccgctgccctccgtcaatcccaagctgctccagggcagagtt
gggcagatgatgtccccagccggtgggttccgtgcctttttcggggctccccctgccccg
cccccctcgcagctgccacaccctccgggccccggatcccacctgcagaacctgaggccg
cagacccagatgttccgtccggacacgacccatttgcacccccagcaccgccggctcctg
caccagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctatgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattattatcagaattacttccagaagctggagaagttggca
gcagctgaggaagtgcacggtgatggtcccaagaaggagcgcactaaactcatcacccca
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctaggaaag
ctcaccgtctccagtgtcaacaacccccggaagatgatcgacgccgtggtgacgtcccgc
agcgaggatgatgagacaaaggagaagcaggtccgggataagaggcgacagaccctcgtc
accatcgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctc
ctgagcctggaaggggagcggccagccctgatgggagaaaggaagcagaagatctgtgac
atgtacgacaatctgagggggaaggcacctgggcaggacaggccgagcgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatcctccccttcctg
gctccagagcaagcggccgacgtgctcatggccacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcacaaacctacctcag
agcgccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagtttggtctg
tccctgctgtacctggttctgagccgaggggaggaattgcagagctcagacacaaacacg
gagctgatgcaggacaaccaatggacagagctgatgctgatggcgacccgggagctcctg
cggatccctcagggagctttggcaaagcccgtgtccatcccctccaacttgatctccctc
ttctctcgctatgttgaccagcagaagctgaacctgctggagacaaaattgcacttagtg
caggggatccggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (9)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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