KEGG   Parus major (Great Tit): 107206332
Entry
107206332         CDS       T04864                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03420  Nucleotide excision repair
pmaj04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107206332 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    107206332 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pmaj04121]
    107206332 (DDB1)
   03400 DNA repair and recombination proteins [BR:pmaj03400]
    107206332 (DDB1)
Ubiquitin system [BR:pmaj04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     107206332 (DDB1)
DNA repair and recombination proteins [BR:pmaj03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      107206332 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107206332 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 107206332
NCBI-ProteinID: XP_015487596
Ensembl: ENSPMJG00000006825
Position
5:6947836..6959661
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKSLVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcacc
ggacacttcacctctgcggaggacctgaacctgctgattgccaagaacacccggctggag
atttacgtggtgacagccgaggggctacggcccgtcaaggaagtgggaatgtatggaaaa
accgccgtcatggagctcttccgccccaagggggagagcaaggatttgctgttcatcctg
acggccaagtacaatgcctgcatcctggaatacaagcagaacggggatagcattgacatc
atcacccgtgcccatggaaatgtgcaggatcgcatcggccgcccctcggagacggggatc
atcgggatcattgaccccgagtgccggatgatcgggctgcggctctacgatggcctcttc
aaggtcatccccctggatcgggagaacaaggaattaaaggccttcaacatccgcctggaa
gagctccaggtcatcgacgtgaaattcctctacggctgccaagctcccaccatctgcttc
gtctaccaggatccccagggccgccatgtgaagacatacgaggtgtccctgcgggagaag
gaattcaacaaaggcccttggaagcaggaaaatgtggaggccgaagcctccatggtcatc
gcagtgccagagccctttggaggtgccattatcatcggacaggaatccatcacctaccac
aatggggataaatacctggctatcgctcctcccatcatcaagcaaagcaccatcgtgtgc
cacaaccgtgtggatcccaacggatcgcggtatttgctgggagacatggaagggcggctc
ttcatgctgctcctggagaaggaagagcagatggatggcactgtcaccttgaaggatctg
cgtgtggagctgctgggagagacatccattgctgagtgcctgacctacctggataatgga
gtggtgtttgttggctccaggcttggagattcccagctcgtgaagctcaatgtggacagc
aatgagcagggatcctacgtggtggccatggagaccttcaccaacctcgggcccattgtg
gacatgtgcgtggtggacctggagagacaaggccaaggccagctggtcacctgctccggg
gctttcaaagagggatcgttgcggatcatccggaacggcatcgggatccatgagcacgcc
agcatcgacctgccgggaattaaaggattgtggccactgaggtcagatccgcaccgggag
acggacaataccttggtgctgtccttcgttggccagaccagggttctgatgttgaatgga
gaggaagtggaagagacggagctcacaggatttgtggatgaccagcagacgttcttctgt
ggcaatgtggcacatcagcaactgatccagatcacctctgcctcggtgcgactggtcagc
caggagcccaaatccctggtgagcgagtggaaagagcccaatgggaagaacatcagtgtc
gcttcctgcaacagcaatcaggtggtggtggccgtgggaagagccttgtactacctggaa
atccggccccaggagctccggcagatcagctgcacagagatggagcacgaggtggcctgc
ctggacatcacccccctgggggactccaacgggatgtccccgctctgcgccatcgggctc
tggactgacatctctgcccgcatcctgaagctcccgtccttcgagctgctgcacaaggag
atgctgggaggagagattatccctcgctccatcctgatgacgaccttcgagagcagccac
tacctcctgtgtgccctgggggatggagctctcttctactttggcctcagcctcgagaca
ggcttgctgagtgacaggaagaaggtgaccctgggcacgcagcccacagtgctgaggacg
ttccgctccttgtccaccaccaacgtgttcgcctgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtcaactacatgtgc
cccctcaattccgacggatatcccgacagtttggccttggccaacaacagcacactgacc
atcggcaccattgatgagatccagaagctgcacatccgcactgttcccctctatgagtcg
cccaggaaaatctgctaccaagaggtatcccagtgttttggggtgctgtccagccggatt
gaggtgcaggatgccagtgggggcaccacggcactcagacccagcgccagcacccaggcc
ttgtccagcagcgtgagcaccagcaagctgttttccagcagcacagctccgcacgagaca
tccttcggagaggaggtggaagtgcataacctgctcatcatagaccagcacacctttgaa
gtgctccatgctcaccagttcctgcaaaacgagtatgccctcagcctggtctcctgcaag
ctgggaaaggatcccaacacctacttcattgtgggcactgccatggtgtatcccgaggaa
gcggagcccaagcaaggccggatcgttgtcttccactactctgatgggaagctgcagagc
ctggctgagaaggaggtcaagggagctgtgtattccatggtggaattcaacgggaagctg
ttagccagcatcaacagcacggtccgcctgtacgagtggacagcggagaaggaattgcgc
acggaatgcaaccactacaacaacatcatggccctgtacctgaaaaccaagggggatttc
atcctggtgggagacctcatgcgctctgtgctgctcctggcctacaaacccatggaaggg
aatttcgaggagattgcccgggatttcaatccaaactggatgagtgccgtggagatcctg
gatgatgataatttcttgggagcggagaacgctttcaatctgtttgtgtgccagaaggac
agcgcggccacgacagatgaggagaggcaacacctgcaggaagtgggattatcccacctc
ggagagttcgtcaatgtcttctgccacggatccctggtcatgcagaacttgggagagact
tccacacccacccagggatccgtgctcttcggcactgtcaatggcatgatcggcctggtg
acatccctgtcggaaagctggtacaacctgctcctggacatgcagaataggctcaacaaa
gtcatcaagagtgtggggaagattgagcattccttctggagatcattccacaccgaacgg
aagacagaaccggccacgggattcattgatggagacctgatcgagagtttcctggacatc
agcaggcccaagatgcaggaagtggtggcaaacctgcagattgacgatggaagcgggatg
aagagggaagccaccgtggacgacctcataaagatcgtagaggagctgacccggatccat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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