KEGG   Parus major (Great Tit): 107206947
Entry
107206947         CDS       T04864                                 
Symbol
EXOSC3
Name
(RefSeq) exosome complex component RRP40
  KO
K03681  exosome complex component RRP40
Organism
pmaj  Parus major (Great Tit)
Pathway
pmaj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmaj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107206947 (EXOSC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmaj03019]
    107206947 (EXOSC3)
Messenger RNA biogenesis [BR:pmaj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107206947 (EXOSC3)
SSDB
Motif
Pfam: RRP40_S1 RRP40_N_mamm KH_6 Rrp40_N RRP4_S1
Other DBs
NCBI-GeneID: 107206947
NCBI-ProteinID: XP_015488926
Ensembl: ENSPMJG00000003608
Position
6:complement(17827873..17830954)
AA seq 256 aa
MAAERGTAAEALVGQVVLPGDLLLLPAHYDEDAEGERLRLSAGAAPQGRLLCGPGLRRSG
AGLLVTKCGLLRHRPAGGGAYWVDSQQKRYVPVKGDHVIGIVTVKAGDVFRLDVGGSEPA
SLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSSGKSSGMGIIGQDGFL
FKVSLGLIRKLLAPNCEIIQELSQLYPFELVVGMNGRIWVKAKTVQQTLIIVNILEACEY
MTAEQRKQALAKLSGN
NT seq 771 nt   +upstreamnt  +downstreamnt
atggcggcggagcgcggcacggcggccgaggccctcgtggggcaggtggtgctgcccggg
gacctgctgctgctccccgcgcactacgacgaggacgcggagggcgagcggctgcgactg
agcgcgggcgcggcgccgcaggggcggctgctgtgcgggccggggctgcggcgcagcggg
gccgggctgctggtgaccaagtgcgggttgctgcggcaccggcccgcgggcggcggcgcc
tactgggtggactcgcagcagaagcggtacgtgccggtgaagggcgaccacgtcataggg
atcgtgacggtcaaagcgggggacgtgttcagactggacgtgggcggcagcgagccggcg
tccctgtcctacctggccttcgaaggcgccacgaagaggaacaggccgaacgtgcaggtg
ggagatcttatttacggtcagtttgttgtagcaaataaagacatggaaccagagatggtc
tgtatagacagcagtggaaaatcaagtggaatgggaataattggacaagacggcttcctc
tttaaagtctccttaggtctaataagaaagctcttggctcccaattgtgaaataattcaa
gagttgtcacagttgtacccatttgagctggtggtgggaatgaatggaagaatatgggta
aaagcaaaaacagttcaacagactttaattatagtaaatattttggaagcctgtgaatat
atgactgcagaacagagaaaacaagcgcttgccaaactgtcagggaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system