KEGG   Prochlorococcus marinus MIT 9515: P9515_16631
Entry
P9515_16631       CDS       T00465                                 
Symbol
rpoC2
Name
(GenBank) RNA polymerase beta prime subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pmc  Prochlorococcus marinus MIT 9515
Pathway
pmc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    P9515_16631 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmc03021]
    P9515_16631 (rpoC2)
   03400 DNA repair and recombination proteins [BR:pmc03400]
    P9515_16631 (rpoC2)
Enzymes [BR:pmc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     P9515_16631 (rpoC2)
Transcription machinery [BR:pmc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     P9515_16631 (rpoC2)
DNA repair and recombination proteins [BR:pmc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      P9515_16631 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABM72870
CyanoBase: P9515_16631
UniProt: A2BYK9
Position
complement(1451371..1455471)
AA seq 1366 aa
MTSSKPKKSSRVRKTSKNSKKNNKIIMPTLAKTPPSFKNKVVDKKALKNLVSWAYKTHGT
AVTAAMADNLKDLGFKYATQAAVSISVEDLKVPEAKQDLIGQAEAQITSTEECYRLGEIT
EVERHTKVIDTWTETNERLVDAVKNNFNQNDPLNSVWMMANSGARGNMSQVRQLVGMRGL
MANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQD
VIVREEDCGTERSIVIEAEDGKFGSRLIGRLSAEDVLDSEDNLIIPKNTAIDPSLSKTIE
TSLISTVNIRSPLTCEANRSVCRKCYGWALAHNHLVDLGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVSTAESGVVRSKIKGKVEFSSKAKIRGYRTPHGVEAKQAEVDFLLKIIPSGNNS
NKAQKIEVTSGSLLFVDDGQEIDSDITVAQITSGAVKKSVEKATKDVICDLAGQVRYDKV
LQPKEVTDRQGNITLKAQRLGRLWVLAGDVYNLPPNAKPVISTEKNVEQGTVLAEASQYS
EFGGEVRLRESVGDSREVQIVTTSMLLSNFNLIEESTHSGEIFHLESNDGTIYRLNTSPG
SKISSGEVIADLADERFRTKTGGLVKYAPGLSVKKARSSKNGFEVSQGGTLLWIPQETHE
INKDISLLMTEDMAWIEAGTEVVKDIFSQTSGIVTVTQKNDILREITVRNGSFHECEDEE
VLNRFTEEGQLVNPGEKIIDGVDNNEILFVQKLETSKSKGLLLRTVEEFNIPDEAELPEL
THVKQEKGPSLGLKAIQRLSYKDGELIKSVEGVELLKTHLSLESFDATPQMTIDVETIKD
KSNDSINRLNLVILESILVRRDTISDSSHGSTHTELQVKNNQQVKAGDVIATTQILCKEK
GIVQLPDLVENEPIRRLIVEREEDKIKINITGKALVKVGDRVVDGDSISEGEKATSCGEI
EEVSSKCVTLRLGRPYMVSPDSVLHVKDGDLVLRGDGLALLVFERQKTGDIVQGLPRIEE
LLEARRPRDSSTLCKRSGVVQIKEGNDDESVSLSVIERDDSINEYQLLIGQNIMVSDGQQ
VKGGELLTDGPINPHELLDCLFTDIKDQKPLMDAARESISKLQRRMVNEVQNVYKSQGVA
IDDKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEDTNQAMSITGGAPAEFTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFV
EELASEAGPHPDILAEESGGYRRAQNLRPDYTVDMPQSPTVSSTAILDDPSDEDLETTRN
RHGIDPSSSNFAAFARPNAENQFSEDQLPDPAALEGLQEEGLLSDE
NT seq 4101 nt   +upstreamnt  +downstreamnt
atgacatcatctaaaccaaaaaaaagttcaagagtacgtaaaacttcaaaaaattcaaaa
aaaaataataaaataataatgcctacattggcaaaaactccaccttcattcaaaaataaa
gtagtagataaaaaagctttaaagaatttagtttcatgggcttataaaactcatggtaca
gctgtaacggcggcaatggctgataatttaaaagatttaggatttaaatatgctacacaa
gcagctgtttcgatatcagtagaggatctgaaagttcctgaagctaaacaagatttaatt
ggacaggcagaagctcaaattacatctactgaagagtgttacagacttggagaaattaca
gaagttgagagacatacaaaagttattgatacatggactgaaactaatgagagattagtt
gatgcagttaagaataatttcaatcaaaatgatccacttaactcagtttggatgatggct
aattctggggctagaggtaatatgtctcaggtaagacaacttgttgggatgagaggttta
atggctaatcctcaaggggagattattgatttacctatcagaacaaactttagggaagga
cttacagttactgaatatgtaatttcttcttatggcgctaggaaaggtttagtcgataca
gcattaagaaccgctgattcaggttatttgacaagaagattagttgatgttgcacaagat
gtaattgtcagagaagaggattgcggtacagaaagatcaattgtaatagaagctgaagac
ggtaaattcggatcaaggcttataggaagactttctgccgaagatgttttggactctgaa
gacaacttaattattccaaaaaacactgcaattgacccttctttatctaaaactatagag
acatcattaatctcaacagtaaatattagatctccattaacttgcgaggctaatcgttca
gtttgcagaaaatgttatggatgggctttagctcataatcatttagtcgatttaggagaa
gctgtagggattattgctgctcaatcaattggagaacctggaacccaattaaccatgaga
accttccatactggcggggtatctacagcagaaagtggagttgtaagatctaaaattaaa
ggtaaagttgaatttagttcaaaggcgaagatcagaggatatagaaccccgcatggagtt
gaagctaaacaagctgaagtagattttttactaaagataattccatcggggaataactct
aacaaagctcaaaaaattgaagtaacaagtggatctcttttatttgtagatgatggtcag
gaaattgattcagatataactgtcgcacaaattacttcaggagccgtaaagaaaagtgtc
gaaaaagccaccaaagatgttatttgtgatttagctggacaagtaaggtatgacaaagtc
cttcaaccaaaggaagttacagataggcaaggtaatatcactctaaaagctcaaagatta
ggcagactatgggttttggctggagacgtttataatttacctcccaatgctaaacctgtt
atttcaacagaaaaaaatgtagaacagggaactgttttagccgaggcgagccaatacagc
gagtttggtggagaagtgcgtttaagggaatcagtaggagattctcgagaagttcagatt
gtaacaacttcaatgctattaagtaattttaacttgattgaagaatccactcattctggg
gaaatatttcatttagagtctaatgatggaactatttatcgattaaatacttcacccggg
agcaaaattagtagcggtgaagtcattgctgatttagctgatgaaagatttagaactaaa
actggaggattggttaaatatgcacctggtttaagtgttaaaaaagcaagatcatctaaa
aatggtttcgaagttagtcaaggtggaacattgctttggattcctcaagagactcatgaa
ataaataaagatatatcattgcttatgacagaggatatggcatggatagaggcaggaaca
gaagtagttaaagatatatttagtcaaacctcagggattgtcacagtaactcaaaaaaat
gatattttgcgagaaattactgttagaaatggttcttttcatgagtgtgaagatgaagag
gttttaaatcgatttactgaagaaggacaattagttaatcctggtgagaaaattattgat
ggagtcgataataatgaaattctgtttgttcaaaaattagaaacatcaaaaagtaaaggt
ttactcttaagaactgtagaagaatttaatattcctgatgaggctgaattgccagaatta
acccatgtaaagcaggaaaaaggaccatcacttggattgaaagctattcaaaggctctct
tataaagatggtgaattaataaaatctgttgaaggtgtagaacttctaaaaacccatttg
agtttagaaagctttgatgctacaccccagatgaccattgatgttgagacaattaaagat
aaaagtaatgactcaataaatagattaaatttagttattttggaatcaattttggtgagg
agggataccatatccgattctagtcatggttcaacacatactgaattacaagtgaagaat
aatcagcaagttaaagctggagatgttattgctactactcaaattctttgtaaagagaaa
ggaatagttcaattacccgatctggttgagaacgaacccattagacgactaattgttgag
agagaagaagataaaataaaaattaatatcacaggtaaagcgcttgttaaagttggtgat
cgtgttgtggatggagattcaatcagtgaaggagaaaaagctacttcatgtggagaaata
gaagaagtttctagtaaatgtgtaaccttgcgacttggaagaccatatatggtttctcct
gattctgttttgcatgtaaaagatggagatttagttcttcgaggagatggcttagcatta
ctagtttttgaaagacagaaaacaggagatattgttcagggcttacctcgaattgaagaa
ttgttagaggcgaggagaccaagagattcatcaactttatgtaaaagatctggagttgta
caaatcaaagaaggaaatgatgatgaatcagtatctttatcagttatagaaagagatgat
tctattaacgagtatcaacttttaataggacaaaatattatggtaagtgatggccaacaa
gtgaaagggggagaattgttaacagatggtccaattaatcctcatgagttacttgattgt
ttatttacagatataaaagatcaaaaacctttaatggatgcagctagagaatcaatatca
aaattacaaagaaggatggtaaacgaggtccagaatgtttataagtctcagggagtagcg
attgatgataaacatatcgaagtgatagtaagacaaatgaccagtaaagttcgtattgaa
gatgcaggagatactactcttcttccaggggaattaatagaactaagacaagttgaagac
acaaatcaagcaatgtctattactggaggagcaccagcagagtttactcccgttttatta
ggtattactaaagcttcccttaatacagatagttttatttcagcagcatctttccaagaa
acaaccagagttcttactgaagctgccatcgaaggtaaatcagactggcttagaggttta
aaagagaatgtcattattggaagactcatccctgctggtacaggttttagtgggtttgtt
gaagaattagcttcagaagcagggcctcatcccgatattctcgcagaagaatctggtgga
tatagacgagcccagaatttaagaccagattatacagttgacatgcctcaatcccctaca
gtaagttctactgctattcttgatgatccaagtgatgaagatttagaaactactaggaat
agacatggaattgatccttcctcaagtaattttgctgcttttgcaaggcctaatgctgaa
aatcaattttctgaagaccaattacccgatccagcagctttggaagggttacaagaggag
ggacttctttctgatgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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