KEGG   Prochlorococcus marinus MIT 9303: P9303_09651
Entry
P9303_09651       CDS       T00466                                 
Symbol
srmB
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
pmf  Prochlorococcus marinus MIT 9303
Pathway
pmf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    P9303_09651 (srmB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmf03019]
    P9303_09651 (srmB)
   03009 Ribosome biogenesis [BR:pmf03009]
    P9303_09651 (srmB)
Messenger RNA biogenesis [BR:pmf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     P9303_09651 (srmB)
Ribosome biogenesis [BR:pmf03009]
 Prokaryotic type
  rRNA helicases
   P9303_09651 (srmB)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22 B12-binding Flavi_DEAD DEDD_Tnp_IS110 AAA_19
Other DBs
NCBI-ProteinID: ABM77716
UniProt: A2C8A6
Position
877054..878964
AA seq 636 aa
MGRCLPDLKDQSGRQRLFSMTHTKSHEDVSCSPEKSAPEISSTSSDDGLTTVAEATNQNN
SDDGSVAVAAEACEDIEATELVSEFDCFGFSEPLLKTLAEKGYKQPSPIQKAAIPELMLG
RDLVGQAQTGTGKTAAFALPLIERLQDHGSRPQVLVLAPTRELAMQVADSFRAYAVGHPH
LKVLAVYGGADFRSQINTLKRGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLR
MGFIDDVEWILEQLPKERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQR
CITLQNSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQ
RERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSG
EAILFVNPRERRFVGGFERAVGQPIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSE
ETALLQELIQRVVEELSLSPEQLAVAALELAVGPGPILVQADEGWLQQSTQRSRRNDRHE
ISRGGSGRRPERSSRPPEDHMERFRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIF
ESHSLVDLPKGMPEDVFKDLKRLKVMNRELHIQRAS
NT seq 1911 nt   +upstreamnt  +downstreamnt
atggggcgttgtctgcctgatttaaaggatcaatcaggcagacaacgccttttctcgatg
acccatacaaaatcgcacgaggatgtctcgtgttcccctgagaagagtgcgcctgagatc
tcttcaacgagctcggatgatggtttaaccactgtggctgaggccaccaatcaaaacaat
tcagacgatggctcggtcgctgtagccgctgaggcctgtgaagatattgaagcgacagag
ttagtttccgaattcgattgttttggctttagcgagccgttgctcaaaacccttgcagaa
aagggttataagcaaccctctccaattcagaaagctgctattccagaattgatgctgggt
cgtgatctagttggtcaggctcagactggaacaggcaaaacagcagcttttgcgttgccc
ctgatcgagcggcttcaggatcatggcagtcgtccccaagtgttggtgctggccccgacc
cgggagttggcgatgcaggtcgcggattcgttccgtgcttatgccgttggccatccgcat
ctcaaagttttggcggtttatggcggagccgatttccgctctcagatcaatacgctgaag
cgtggagtggatgttgtggtaggtaccccgggccgcttgatggatcacatgcggcagggc
actctcgacacctctggtttgaggtgtttggtgcttgacgaagccgatgaaatgctgcgt
atgggcttcatcgatgatgtcgaatggatcctggagcagttgcctaaagaacgtcagatg
gtgctgttttcggcaacgatgccatcagagatccgtcgactttcgaagcgttacctacac
gaaccagcagagatcacgatcaagagccgtgatcaggaggctcgtctcatccgtcagcga
tgcatcactctccagaacagccacaaacttgaagcccttagaagggttcttgaggctttc
actggtgagggagtgattatttttgcccgcaccaaggtgatcactctcacagttgctgag
gcactggaatccgctggacacgatgttgccgtactgaatggggatgtccctcagaaccaa
cgggaacgaacggttgaacgtttgcgcaaaggcagcgtgaatatcttggttgctactgat
gttgccgctcgcggcctagatgtcgatcgcatcagcctggtgatcaactacgacatcccc
tttgatagcgaagcctatgtgcatcgcatcgggcgtaccggccgggctggccgcagtgga
gaggccattttgttcgtgaatcctagggaacgtcgctttgtgggcggctttgaacgtgct
gtaggtcaacccatcgaaccgatggatatccccaataatgcagcgattaaccagagtcgt
cttgatcgccttcgtcaacgcctcaccactgccgctaagacggagagagataactctgag
gagacagcccttctccaggagctaatccagcgtgttgttgaggagctcagcctcagtcca
gagcaattggctgtagcagcattagagcttgctgttggcccaggcccaatcttggtgcag
gctgatgagggctggttgcagcaatcaactcagcgcagccgccgcaacgatcgtcacgaa
attagtcgtggaggctctggccgaagacctgagcgttcatcgagaccgccggaagatcac
atggagcgctttcgtgtggaagtcggtcaccgcgatcgtgtcaagcctggcaatctggtt
ggtgccatcgccaatgaatccgggcttgaaggacggatgattggtcgcatccagattttt
gagtcgcacagtcttgtggatcttcccaaaggaatgcctgaggatgtttttaaagatcta
aaacgtctcaaggtgatgaatcgagagttgcatatccagcgcgcttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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