KEGG T00488: P9301

Prochlorococcus marinus MIT 9301: P9301_16751

Entry

P9301_16751       CDS       T00488

Symbol

rpoC1

Name

(GenBank) RNA polymerase gamma subunit

K03046

DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Organism

pmg Prochlorococcus marinus MIT 9301

Pathway

pmg03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:pmg00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    P9301_16751 (rpoC1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmg03021]
    P9301_16751 (rpoC1)
   03400 DNA repair and recombination proteins [BR:pmg03400]
    P9301_16751 (rpoC1)
Enzymes [BR:pmg01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     P9301_16751 (rpoC1)
Transcription machinery [BR:pmg03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     P9301_16751 (rpoC1)
DNA repair and recombination proteins [BR:pmg03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      P9301_16751 (rpoC1)

SSDB

Motif

Pfam:

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH Pkinase_fungal

Other DBs

NCBI-ProteinID:

ABO18298

UniProt:

A3PEX3

Position

complement(1404027..1405931)

AA seq 634 aa
MTNSNLRTENHFDYVKISIASPQRIMDWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVSHVWY
LKGIPSYVAILLDIPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEWLEIEDEIYAE
DSTIENEPFVGIGAEALKQLLEDLDLNQVAEELREEITNSKGQKRAKLIKRIRVIDNFIA
TNAKPEWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQKADDEVM
QVLQEVIEGHPILLNRAPTLHRLGIQAFEPKLVGGRAIQLHPLVCPAFNADFDGDQMAVH
VPLALEAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPNYQKPEFGDNK
TTFASLEDVIFAFEDKRLSLHEWIWVRFNGEVEDEDEMRSPQKTQLLEDSSRLEIWNLRR
DRFDSDNNLISRFILTTVGRVVMNYTIIDSVSKT

NT seq 1905 nt +upstreamnt +downstreamnt
atgacaaacagcaacttaagaactgaaaatcactttgattacgtcaaaatttcaatagct
tctccacaaagaataatggattgggggcagaggacattgcccaatggacaagtagttggt
gaagtcactaaaccagagactataaattacaggacacttaaaccggaaatggatgggttg
ttttgtgaaaagatttttgggccatcaaaagattgggaatgccattgtggaaagtacaaa
agggtaagacatcgcggcattgtttgtgaaagatgtggggttgaagtgactgaaagtcga
gtcagaagacataggatgggatatataaaacttgctgcgccagtttcccatgtttggtat
ttgaaaggaatacctagttatgttgcgatactcttggatatccctcttagagatgtagag
caaatagtttattttaattgttatgttgttttagacccgggtgatcataaagaacttaaa
tataagcaattactcactgaggatgaatggctggaaattgaagatgaaatttatgctgaa
gattcaactatcgaaaatgaaccttttgttggaattggtgcagaggcactcaagcaatta
cttgaggaccttgatttaaatcaggttgctgaggagcttagagaagaaattactaacagc
aaagggcaaaagagggcaaaacttataaaaaggataagagttattgataatttcattgca
accaatgctaaaccagaatggatggtattagatgcaatcccagttatacctcctgatctt
agacctatggttcagcttgatggaggaagattcgcaacttcagatttaaacgacttatat
agaagagttataaatagaaataatagactggctaggcttcaagaaattttagctcctgaa
attatcgtaagaaacgaaaaaagaatgcttcaggaggcagttgatgcccttatagataat
ggaaggagaggaagaactgttgttggagcaaataatagggctcttaagtccctaagtgac
ataattgaaggaaaacaaggaagatttagacagaatcttcttggaaagcgtgttgactat
tcaggaagatccgtaatagttgtgggtccaaaattaaaaatgcatcagtgtggtcttcca
aaagaaatggcgatagagctctttcaacctttcgtaattcatagattaattcgacaaaat
attgtaaataatattaaagctgcaaaaaaattaatacaaaaagctgatgacgaagttatg
caggtacttcaggaagtaattgaaggtcatccaattctcttgaatagagcccctacgctg
catcgtttaggaattcaagcttttgaaccgaaattagttggaggtagagcaatacaactt
catcctttagtttgtcctgcattcaatgctgacttcgatggagatcaaatggcagtacat
gttcctttagctttagaggcacaaactgaagcacgcatgcttatgttggccagtaataat
attctttctcctgctaccggggaaccaattgtgactccatcacaagatatggttttggga
tcttattatctaacggctctgcaaccgaattatcaaaaaccagaattcggagataataag
actacttttgcttcattagaagatgttatttttgcttttgaagataaaagactcagccta
cacgaatggatttgggttagatttaatggagaggttgaagatgaagacgaaatgcgtagt
ccacaaaaaactcaattgctagaagatagttcaagactagagatctggaatttaagaagg
gacagatttgactctgataataacttaataagcagatttatactgacaactgttgggaga
gtggttatgaactataccatcatcgattctgtatctaaaacgtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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