KEGG   Parvimonas micra: NW74_05140
Entry
NW74_05140        CDS       T03515                                 
Name
(GenBank) helicase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
pmic  Parvimonas micra
Pathway
pmic03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pmic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    NW74_05140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmic03400]
    NW74_05140
Enzymes [BR:pmic01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     NW74_05140
DNA repair and recombination proteins [BR:pmic03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     NW74_05140
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 PIF1 nSTAND3 HHH_5 DEAD AAA_22 Helicase_RecD UvrD_C PhoH RsgA_GTPase AAA AAA_24 AAA_28 NTPase_1 HHH_3 YNR034W-A-like SLFN-g3_helicase AAA_18 ABC_tran AAA_12 AAA_14 AAA_16 T2SSE Thymidylate_kin UvrD-helicase AAA_29 AAA_17 SRP54 5_3_exonuc AAA_5 HHH_2 RNA_pol_A_CTD
Other DBs
NCBI-ProteinID: AIZ36759
UniProt: A0A0B4S2P4
Position
complement(1109742..1111961)
AA seq 739 aa
MKLTGEVIKVRYVNEENGYSVFDLNTSDGEIKIVGIFDSVNIGESLEVEGEFTYDNKYGE
QLNVSSYQKKLPSSTVEIEKYLASGIISTIGPKNASYIVKQFGKKSLDIVFDETDKLLEV
RGIGKKSIEKIKRSVEELKFSKNILFHLTGLGISLSLSKKIYNIFRENTLEVINENPYKL
IKNVKGIGFLKADEIALKNNLDKNSLYRIESAILYVLTQKAINFGHVYYPKEKLTNEVSK
LIGVETELIEPVYMNLLLSSEVVIDNSFEESNIYLDYLYVSESYIASKLAKMALNDDFKI
LFDIEKEIKEAIKSLSIKLSKIQIDAIKSCFEENISIITGGPGTGKTTIINTISKIYLDN
GYNISLCAPTGRAAKRIEETTGIEAKTIHRMLGYIPSSYDDIGHFEYNEDNPLDTDVIII
DEMSMVDVVLFEKLLRGMKDNTRLVIVGDVDQLPSVGAGNVLRDLINSKKIKYTKLVDIF
RQSESSNIIVNAHKINNGQEPILNEKNSDFFFLKTETPAITRNVVVDLISKRLPNAYGYD
FSKDIQILTQSRKGICGVFELNRLLQDILNPKTETTDELLVGNKLFRVNDKVMQTKNNYN
LSFFDSDGEENFGVYNGDMGHIIFIDKSSKKLTVEMDDNRVIDYTLEDLDNLELAYAITI
HKSQGSEFKSVIIPMFDGYRLLQTRNLLYTAITRAKENIVLVGDKNVMNNMIRNNTINSR
YSNLENRIKHFYGLVEELL
NT seq 2220 nt   +upstreamnt  +downstreamnt
atgaaattaacaggagaagttataaaggtcagatatgtaaatgaagagaacggatattcg
gtttttgatttaaatacaagtgatggagaaataaaaattgtaggaatttttgattctgtt
aatataggagaaagtttagaagttgaaggggaatttacatacgataacaagtatggcgaa
cagctgaatgtatcttcctatcaaaaaaagttacctagttctactgttgaaattgaaaaa
tatttggcaagtggaattatttctacaataggtcctaaaaatgcaagttatatagttaaa
caatttggtaaaaaaagtttagacatagttttcgatgaaactgataaattgttagaagtc
agaggaattggaaagaaaagtatagaaaaaataaaaagatctgttgaagaattaaagttc
agtaaaaacattttatttcatcttactggtcttggtataagtttaagtttatctaaaaaa
atttacaatatctttagagaaaatactttggaagtcatcaatgaaaatccgtataagctg
ataaaaaatgtaaaaggaattggctttttgaaggcagacgaaatagctttgaagaataat
ttagataaaaatagtctctatagaatagaatcagccattctttatgtattaactcaaaaa
gctataaattttggacatgtttactatccaaaagaaaaacttactaatgaagtttctaaa
ctgataggagttgaaacagaacttatagaacctgtatatatgaatttacttttatcttct
gaagtagttatagataattcatttgaggaatcaaatatttatttagattatttatatgtt
tctgaaagttatattgcaagtaaacttgcaaaaatggcattaaatgatgatttcaaaatt
ttatttgatattgaaaaggaaataaaggaagcgattaaaagtctatctataaaattatca
aaaattcaaatagatgcaattaaatcttgttttgaagaaaatatttctattataactggt
ggtccgggcaccggaaaaaccacaataataaatacaatatctaagatatatttagacaat
ggttataatatttctctttgtgctccaaccggtcgagctgcaaaaagaattgaagaaact
accggaatagaagctaagaccattcatagaatgttaggttatattccaagcagttatgat
gatattggacattttgagtataatgaagataatcctttagatactgatgttattattatt
gatgagatgagtatggttgatgtagttctttttgaaaaacttttaagaggaatgaaagat
aatacgagattagtaattgtaggcgatgttgatcagcttccaagtgtcggtgcaggaaat
gtcttgagggatctaattaattctaaaaagataaaatatacaaaacttgttgatattttt
agacaatctgaaagtagtaatataattgttaatgctcacaaaataaataatggacaagag
ccaattttaaatgaaaaaaatagtgattttttctttttaaaaactgaaacaccagcaatt
actagaaatgttgtagttgatttgattagtaaaaggcttccgaatgcttatggctatgat
ttttctaaagatattcaaattcttactcaaagtagaaaaggaatctgtggagtttttgaa
ttaaatagattgttacaggatattttaaatccgaaaactgaaacaactgatgaactatta
gttggtaataaactttttcgtgtaaatgataaagttatgcaaactaaaaataattataat
ctttctttttttgattctgacggagaagaaaattttggtgtatataatggagatatggga
catattattttcattgataaatcaagtaagaagttgacagttgaaatggatgataatagg
gttatagattataccttagaagatttagataatttagaattagcttatgcaataactata
cataagtctcaaggttctgaatttaaatctgtaattattcctatgtttgatggatataga
ctacttcaaaccagaaatttattatatactgctattacaagagctaaggaaaatattgta
ctagttggagataagaatgttatgaataatatgattagaaataatacaataaatagcaga
tattctaatttggaaaatagaataaaacatttttatggtcttgttgaggaattgttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (92)   

Download RDF
DBGET integrated database retrieval system