KEGG   Prochlorococcus marinus MIT 9211: P9211_16071
Entry
P9211_16071       CDS       T00616                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
pmj  Prochlorococcus marinus MIT 9211
Pathway
pmj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pmj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    P9211_16071 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmj03021]
    P9211_16071 (rpoB)
   03400 DNA repair and recombination proteins [BR:pmj03400]
    P9211_16071 (rpoB)
Enzymes [BR:pmj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     P9211_16071 (rpoB)
Transcription machinery [BR:pmj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     P9211_16071 (rpoB)
DNA repair and recombination proteins [BR:pmj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      P9211_16071 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: ABX09538
CyanoBase: P9211_16071
UniProt: A9BCH6
Position
complement(1436468..1439758)
AA seq 1096 aa
MSRSAIQVAKTATHLPDLVEVQRASFKWFLEKGLIEELENFSPITDYTGKLELHFIGSEY
RLKRPRHDVEEAKKRDATFASQMYVTCRLINKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEQDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVIDKLRHPEYYKKSIEAADEEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQSRFFDPKRYDLGRVGRYKINKKLRLTIPDSVRTLTHEDVLSTIDYLINLEL
DVGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAVKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNDYGFIETPFWKVDKGRVIKEGKPIYLSADLEDE
CRVAPGDVATDKEGMIVADLIPVRYRQDFEKVPPEQVDYVQLSPVQVISVATSLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISQVNGTVTYVDANIIV
VTDEEGSEHHHSLQKYQRSNQDTCLNQRPIVHNGDPVIIGQVLADGSACEGGEIALGQNV
LIAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEARQTKLGPEEITREIPNIAEE
SLGNLDEMGIIRIGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PSTERGRVVDVRIYTREQGDELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPYLPDGTPVDIVLNPLGVPSRMNVGQVFELLMGWAASNLDCRVKVVPFDEMYGAE
KSYQTVTAYLKEAASLPGKEWVYNPEDPGKLLLRDGRTGEPFDQPVAVGYSHFLKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIGVYTDEGKEVDLMQDVNPRRST
PSRPTYESLGSDYQED
NT seq 3291 nt   +upstreamnt  +downstreamnt
atgagtagaagcgcgattcaggtcgctaagaccgctacacacctgcctgacttggttgag
gtgcagcgtgcaagctttaagtggtttttggaaaaaggtttaattgaggagcttgagaac
ttctcaccaattactgattacacgggcaagctagagctacattttattggcagtgaatat
cggcttaagcggcctcgccatgatgtggaagaagctaaaaagcgcgatgcaacttttgct
tcccaaatgtatgtaacttgccgtcttattaataaagaaactggagaaataaaagaacaa
gaagtttttattggtgaattgccattaatgactgaaagaggaacatttatcattaatgga
gcagaaagagtaattgttaatcagatagtaagaagccctggcgtatattttaaagatgag
caagataaaaatggccgaagaacttacaatgcaagtgttattcctaatcgcggggcatgg
ttaaagtttgaaacagataagaatgatttacttcatgttcgtgtagataaaactagaaaa
attaatgctcatgttctaatgagagcaatgggtctatcagataatgatgtaatagataaa
ttaagacatcctgaatactataagaaatctattgaagccgctgatgaagaaggtattagc
tccgaggatcaggctttgcttgagctatataaaaagttgcgacctggcgaaccaccctca
gtcagtggtggtcagcaattgcttcagagcaggttctttgacccaaaacgttatgattta
ggacgtgtcggtagatataaaataaacaagaaattacgtttaactatacctgactctgta
agaactctgactcatgaggatgttctttctactattgattatttaattaatcttgagcta
gatgttggtggggcgactttagatgatattgaccatcttggtaatagaagagttagatct
gttggagagttattgcaaaatcaagttcgtgttggtttaaatcgtcttgaaagaataatc
aaggaaagaatgacagtaggtgaaacagattcattgactccagcacaactagtaaacccc
aagcctctagtggctgctgttaaagagttctttggatcaagtcaacttagtcagtttatg
gatcagaccaatcctttggctgaattaactcataaaaggcggatttcggcattaggacca
ggtggtttaactagagaaagagcaggttttgcggtaagagatattcatccttctcattat
ggacgcttgtgtcctattgaaactccagaggggccaaatgctggtctaattaattcctta
gctactcatgccagggttaatgattatggattcattgaaacgcctttctggaaagtagat
aaaggaagagttattaaggagggaaagccaatttatctatctgctgatctagaagatgaa
tgcagagttgcgcctggtgatgttgctacggataaagaaggcatgattgttgctgatttg
attccagttagatataggcaggattttgagaaggttcctcctgagcaagtggattatgtg
caactttcaccagtgcaagtgatttctgtagcgacatctttaattccatttttagaacat
gacgatgcaaacagggctttaatgggttctaatatgcagcgtcaagctgtccctcttctg
cgtccagaacgacctttagttgggacaggtttggaaacacaggttgctagagactccggg
atggtccctatctctcaagtcaatggaacagtaacttatgtagacgctaatatcattgtt
gttactgatgaagaaggttccgagcatcatcattctttgcagaaatatcaacgttctaat
caggacacatgcttgaatcaaagacccattgttcataatggcgatccggtaattattggt
caggttcttgcagacggatctgcatgtgaaggaggagaaatagccttaggtcaaaatgtc
ttaatcgcttatatgccttgggagggttataactatgaggatgcaattttagtcagtgag
agattagtaaaagatgatctatatacttcagtgcatattgaaaaatatgagattgaagct
cgacaaacaaaactaggcccagaggaaataacgagggaaattcccaacatagccgaagaa
agtttgggtaatcttgatgaaatgggcattattaggattggtgcttttgttgagagcgga
gatattcttgtaggaaaagttacccctaagggggagtctgatcaacctcctgaagagaag
cttttaagggctatatttggtgaaaaagcaagagatgtaagagataattcattgagagtt
cctagtactgaaagaggtcgagtcgttgatgtgcgtatttatacgagagaacagggtgat
gaacttccgcctggagcaaatatggtagttcgagtttatgtggcacaaagaagaaaaata
caagtaggggataagatggcaggacgccatgggaataagggaattattagtcggatactt
cctagagaagacatgccttatttgcctgatggaaccccagtagatattgtccttaaccct
cttggtgtgccaagtagaatgaatgttggacaagtttttgagttgttgatgggttgggca
gcctcgaatttggattgcagggttaaagttgttccattcgacgaaatgtatggtgctgaa
aagtcctatcagacagtaactgcttaccttaaagaggccgctagtttgccaggcaaagaa
tgggtctacaacccagaagacccaggaaagctacttctaagagatggaaggactggagaa
ccttttgatcagcctgttgcagttggctactcacatttccttaaattagttcacttagta
gacgataaaattcacgctcgctctactggtccgtactctctagttactcagcaaccttta
ggaggtaaagctcaacaaggaggacaacgtttaggagaaatggaggtttgggctttagag
gcttatggagcagcatatactttgcaagaattgttgactgtcaagtctgatgatatgcaa
ggtcgaaatgaggcgcttaatgcaattgtcaaaggcaagccaattccaaggccaggaacc
ccagaatcgttcaaagttttaatgcgagaacttcagtctcttggactagacattggagtg
tatacagatgaagggaaagaagttgatttgatgcaggatgttaatccacgtcgaagtact
cctagtagaccaacttatgaatcattgggatcagattatcaagaggattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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