KEGG T01473: MDS

Pseudomonas mendocina NK-01: MDS_2413

Entry

MDS_2413 CDS T01473

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pmk Pseudomonas mendocina NK-01

Pathway

pmk03410	Base excision repair
pmk03420	Nucleotide excision repair
pmk03430	Mismatch repair
pmk03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pmk03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pmk03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pmk03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:pmk03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

330503327

NCBI-GeneID:

10457195

UniProt:

F4DU16

Position

2635042..2637570

AA seq 842 aa
MARAQSEYNRKRNFEQTSEPREQPRKRRSKAGALRFVVQKHDARRLHYDFRLELDGTLKS
WAVPKGPSLDPTQKRLAVHVEDHPLDYASFEGSIAEGNYGAGDVIVWDHGIWQPQGDPAG
AYQAGKLKFTLVGEKLSGDWTLVRTRLRGSGDKEQWLLIKERDDIARPSDEYDIVEAQPQ
SVISGALVGGPSKEAKRKESTKPAKSRKAQTEFPDSLAPQLATLAERPPEGDWLYEVKFD
GYRILARMRGDEVRLLTRNGHDWTERLPQQATALAKLGLSDSWLDGEVVALNEQGLPDFQ
QLQNAFDIGRSHDLIYYLFDAPFLNGEDMREVPLETRRGKLKTALGSTRRSPLRFSEAFT
AHHRDIVESACAMSLEGVIGKRSGSLYVSRRSADWIKLKCRLRQEFVIVGYTKPQGSRSG
FGALLLAVNEAGGLRYAGRVGTGFGEASLKALHEQLRKLGRDESPLERKLTAALARGVSW
VEPQLVGEVEFAEWTREGIVRQASFIALRSDKPTAQIVREHPRAPGAAAKKQTKKAESSC
KSSAKPVVAGVPISNPQRVIDPESGTTKLQLAQFYADIAEWLLPYLRKRPVSLVRAPDGV
EGEQFFQKHAERLAIPNIKHLDPKLDPGHARLMEIDSVPALVGAAQMGCIEFHRWGATSD
RIETPDHFVLDLDPDPALPWRSMLEATRLTLSVLDELGLQAFLKTSGGKGMHIIVPLARH
AGWDTVKGFAKALAQFMARQLPERFTATSGPKNRVGKIFIDYLRNGRGASTVSAYSVRAR
PGLPVSVPIARDELDGLRSAQQWTVANLQRRLDGLRQDPWAGYANRQRLTRAMWDRLGAE
AP

NT seq 2529 nt +upstreamnt +downstreamnt
atggccagagcgcagagcgaatacaaccgcaaacgcaatttcgagcagaccagcgaaccc
cgcgaacaaccgcgcaagcgccgcagcaaggccggtgcattgcgtttcgtggtgcagaag
cacgatgcgcgccgcctgcactacgactttcgcctggaactggacggcactctgaagagc
tgggcggtgcccaaggggccgagcctggacccgacgcaaaagcgcctggcggtgcacgtc
gaggatcacccgctggattacgccagcttcgagggcagcatcgccgaaggcaactatggc
gccggcgatgtgatcgtctgggaccatggcatctggcagccgcagggcgacccggcgggt
gcctaccaggccggcaagctcaagttcactctggtgggcgagaaactgtccggggactgg
acgctggtgcgcactcgtctgcgcggcagtggcgacaaggagcagtggctactgatcaag
gagcgcgacgacatcgcgcgccccagcgacgagtacgacatcgtcgaggcacagccacaa
agcgtgatcagcggcgcgctggtgggaggcccaagcaaggaggccaagcgcaaggaatcg
acgaaaccggcaaaaagtcgcaaggcccagacggagttccccgacagccttgcgccgcaa
ctggcgaccctggccgagcgtccgcccgaaggcgactggctgtatgaggtgaagttcgac
ggttaccgcatcctggcgcggatgcgcggcgatgaggtgcgtctgctcacccgcaatggc
catgactggacggagcgcctgccgcaacaggccacggctctggccaagctgggcctgagc
gacagctggctggacggagaggtcgtggcgctcaatgagcaaggcctgccggacttccag
caactgcagaatgccttcgatatcggccgcagccacgatctcatctactacctgttcgat
gcgccgtttctcaacggcgaagacatgcgcgaggtgcccctggagactcggcgcggcaaa
ctcaagactgcattgggcagcacgcggcgcagcccgctgcgtttttcggaggcttttacc
gcccatcacagggacatcgtcgagagcgcctgcgccatgtcgctggaaggcgtcatcggc
aagcgctcgggcagcctttacgtgtcgcgccgcagcgcggactggatcaagctcaaatgc
cgtctgcgccaggagttcgtcatcgtcggctacactaagccgcagggcagtcgcagcggc
tttggcgcgctgctgttggcggtgaacgaggcgggcgggctgcgctatgccgggcgggtc
ggcaccggcttcggggaagcctcgctcaaggccctgcatgagcagttgcgcaagctgggg
cgagacgagtcgccactcgagcggaaactgaccgctgccctggcccgcggtgtgagctgg
gttgagccgcaactggtcggcgaggtcgagttcgccgaatggacgcgtgaaggcatcgtg
cgccaggccagcttcatcgccttgcgcagtgacaagccgacggcgcagatcgttcgtgag
catccgcgtgcgccaggcgctgcagcgaagaaacagaccaagaaggccgaaagctcgtgc
aagtcatccgccaagccggtggtggccggggtgccgatcagcaatccgcagcgggtgatc
gacccggaaagcggcaccacgaaactgcagctcgctcagttctacgcggatatcgccgaa
tggttgctaccgtacctgcgcaaacggccggtctcgctggtgcgggcgccggacggggta
gagggggaacaattcttccagaagcatgccgagcgcctggcaatccccaacatcaagcat
ctcgatcccaagctggatcccggccacgcgcgcctcatggaaatcgacagtgtgccagcc
ctggtcggtgcagcgcagatgggctgcatcgagttccaccgctggggcgctaccagcgac
cgcatcgaaacgcccgatcatttcgtgctcgatctcgacccggacccggcgctgccgtgg
cgcagcatgctggaggcgacccggctgaccctgagcgtgctcgacgaactgggtctgcag
gcatttctcaagaccagcggtggcaaaggcatgcacatcatcgtgccgcttgcccggcac
gccggctgggatacggtcaagggcttcgccaaggccctggcgcagttcatggccaggcag
ctacccgagcgattcaccgcgacgtcggggccgaagaatcgggtggggaaaatcttcatc
gactatctgcgcaacggccgtggcgccagtacggtgtcggcctactcggtgcgcgcgcgg
ccaggcctgccggtttcggtaccgatcgcccgggacgaactggacggcctgcgcagcgcc
cagcaatggacggtcgccaatctgcagcgacgcctggacgggctgcgccaggacccctgg
gccggctatgccaaccgccagcgcctgacccgcgcgatgtgggaccggctcggcgccgaa
gcaccatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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