KEGG   Pseudomonas mendocina NK-01: MDS_3088
Entry
MDS_3088          CDS       T01473                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
pmk  Pseudomonas mendocina NK-01
Brite
KEGG Orthology (KO) [BR:pmk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pmk03016]
    MDS_3088
Enzymes [BR:pmk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     MDS_3088
Transfer RNA biogenesis [BR:pmk03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    MDS_3088
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AEB59119
Position
complement(3411754..3412887)
AA seq 377 aa
MANDIHWILDDAGLAEHCAAWQALPFVALDTEFMRVDTFYPIAGLLQVSGGDGAYLIDPL
RISDWRPFAALLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPLFDTQLAAGYLNLGFSMGY
SRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQKVEWV
LEDGAELVANLSREVAPEDAWREAKLAWKLSRQQQAVLRALCAWREREARARNQPRNRVL
REHSLWPLARTQPDNLVALARIEDMHPKTVRQDGETLLKLIREAAALPPEQWPEALPEPL
PIEASALLKKLRAVGQREGERLDIVPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDCLAAEGESA
NT seq 1134 nt   +upstreamnt  +downstreamnt
gtggctaacgacattcactggattctcgacgacgccggcctggccgagcattgcgccgcc
tggcaggcgctgcctttcgtcgcgctggacaccgagttcatgcgcgtcgacacgttctac
cccatcgccgggctgctgcaggtcagcggcggcgacggcgcctatctgatcgaccccttg
cgcatcagtgactggcggcctttcgctgcgttgctcgaagcgccgaacgtggtcaaggtg
ctgcattcgtgcagtgaagacctggaggtcttcctgcgcctgagcggcagcctgccggcg
ccgctgttcgatacgcaattggccgcgggttatctcaacctcggtttctccatgggctac
tcgcgcctggtgcaggccctgctcgatatcgaactgcccaagggcgaaacgcgttccgac
tggctgcagcggccgctgtccgaactgcaggtgcgctacgccgccgaagacgtgctgcat
ctggtcgaggtgtaccgtgcgctgatggctcggctggcgccgcagaaggtcgagtgggtg
ctggaggatggtgccgaactggtggccaacctgagccgtgaagtggcgcccgaggatgcc
tggcgcgaggccaagctggcctggaaactgtcgcgtcagcaacaagcggtgctgcgcgca
ctgtgcgcctggcgcgagcgcgaggcgagggcgcgtaatcagccgcgtaatcgcgtgctg
cgcgagcattcgctgtggccgctggcgcgcacccaaccggataacctggtggcgctggcg
cgtatcgaggacatgcacccgaagaccgtgcgccaggatggcgaaaccctgctgaagctg
attcgcgaggccgcggcgctgccccccgagcaatggcccgaggccttgcccgagccgttg
ccgatcgaagcctcggcgctgctcaagaagctgcgcgccgtcggccagcgcgagggcgaa
cgcctggatatcgtgcccgagctgatgctgcgcaagaaaaccctggaggccctgctgaaa
agcggctttcccaatggtccgtaccaactgcccgattccctgcgtggctggcgtcgggaa
ttgatgggccaggctcttctggactgcctggccgctgaaggagaatccgcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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