KEGG   Pseudomonas mendocina NK-01: MDS_3286
Entry
MDS_3286          CDS       T01473                                 
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
  KO
K07259  serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Organism
pmk  Pseudomonas mendocina NK-01
Pathway
pmk00550  Peptidoglycan biosynthesis
pmk01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pmk00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    MDS_3286
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:pmk01002]
    MDS_3286
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:pmk01011]
    MDS_3286
Enzymes [BR:pmk01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     MDS_3286
Peptidases and inhibitors [BR:pmk01002]
 Serine peptidases
  Family S13: D-Ala-D-Ala peptidase C family
   MDS_3286
Peptidoglycan biosynthesis and degradation proteins [BR:pmk01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   MDS_3286
SSDB
Motif
Pfam: Peptidase_S13 Beta-lactamase2
Other DBs
NCBI-ProteinID: AEB59317
Position
3635205..3636641
AA seq 478 aa
MIQRFRQLALSAVLLPLALSCHAASAALPAKVEQALKANKISSNSLSVMTVPLGGQTGGL
QFNADVSVNPASTMKLVTTYAALELLGPNHQWKTEFYADGPLKDGVLHGNLYLKGGGDPK
LNMEKLWLLLRDLRINGVRQVQGDLVLDRSFFVAPQLPAFNDDGGDANKPFLVKPDSLLV
NLKAQRFITRAEDGKVSIAMDPPIASIRIDNQVRLLKAAKCPSWPDIRYNAVDQFDGTTL
IVSGQLAEGCSAQTYLSLLDHPSYAAGAVRGIWQELGGKILGKDRQGAVPEDARMLVRAF
SPDVVEIVRDINKYSNNTMARQLFLSIGAQFRTEADQDDSMAAQRVIRSWLARKGITAPH
LVMENGSGLSRAERISVREMALILQAAWRSPYAAEFRSSMPLVAMDGTMRRRLQRTPLVG
EAHIKTGTLNNVRAIAGYSRDSNGQDWAVVAILNDPKPWGATSILDQVLLETYKQPKR
NT seq 1437 nt   +upstreamnt  +downstreamnt
atgattcagcggtttcgccaactggcgctgagcgccgtgctcctgcccctcgctctctcc
tgccatgctgccagcgctgcactacctgccaaggtggaacaggcgctcaaggccaacaag
atttccagcaattcgctgtcggtgatgaccgtgccactgggcggacagaccggcggcctg
caattcaacgccgatgtctcggtcaacccggcgtcgaccatgaagctggtgaccacgtat
gcggcgctcgaactgctgggcccgaaccatcagtggaagacagagttctatgctgacggc
ccgctgaaggacggtgtgctgcacggcaacctctacctcaagggtggcggtgacccgaaa
ctgaacatggaaaaactctggctgctgctacgcgacctgcgtatcaatggcgttcggcag
gtccagggtgacctggtgcttgatcgcagcttcttcgtcgccccgcagttgccggcattc
aatgacgatggcggcgatgccaacaagccgtttctggtgaagcccgactcgctgctggtc
aacctcaaggcgcaacgtttcatcacccgtgccgaagacggcaaggtgagcatcgccatg
gacccgcccatcgcctcgatccgtatcgacaaccaggtccgcctgctcaaggccgccaag
tgcccatcctggcccgacattcgctacaacgcggtggatcagttcgacggcaccacgctg
atcgtcagtggccagttggccgaaggctgcagcgcgcagacctacctgtcgttgctcgat
cacccaagctacgcagcaggcgctgtacgcggcatctggcaggaactgggcggcaagatc
ctcggcaaggaccgccagggcgcagttccggaagacgcgcgcatgctggtacgcgccttc
tcgcccgatgtggtggagatcgtccgcgacatcaacaagtacagtaacaacaccatggca
cggcagttgttcctcagcatcggcgcgcaatttcgtaccgaagccgaccaggacgactcc
atggccgcgcaacgagtgatccgcagctggctggcacgcaagggcatcaccgcgccgcat
ctggtgatggaaaatggctccggcctgtcgcgcgccgagcgcatcagtgttcgggaaatg
gccctgattctccaggctgcctggcgcagcccgtacgctgccgagttccgcagctcgatg
ccactggtagcaatggacggcaccatgcgccggcgcctgcaacgcaccccgctggtgggc
gaagcgcacatcaagaccggtacgctgaacaacgtacgcgccatcgccggctacagtcgc
gacagcaatggccaggactgggctgtggtcgccatcctcaacgaccccaaaccctgggga
gccacctcgattctcgatcaggtgctgctggaaacctacaaacagcccaagcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system