KEGG T00142: PMM0729

Prochlorococcus marinus MED4: PMM0729

Entry

PMM0729 CDS T00142

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pmm Prochlorococcus marinus MED4

Pathway

pmm03410	Base excision repair
pmm03420	Nucleotide excision repair
pmm03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pmm03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pmm03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pmm03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme HARE-HTH

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

CyanoBase:

CYORF:

UniProt:

Position

complement(692919..694556)

AA seq 545 aa
MSLKKFSELFINLDSCNSTNKKIGILQNYFSSNEALENSWTIYLLTGKNNKRFISGRSLK
TLFSEIYEYPLWLIDSCYLKVGDSAEVISLLLRNVITEKNTKYQDGSLHELLNKSFPELS
ILKEDEKKLRVKEIWETIPKENLLVINKILTGTFRVGVSIGLITKSIAKLINIDEAIISH
RLMGDFIPSEESYKLLIDKKINPSELNYKPYPFLLANTFEKKIIDKSTNDFQFEWKWDGI
RIQLIKRSGKVSIWTRGQDLVNKSFPELVEKISSIKDDFVIDGELLVWDFKKSLPLNFSL
LQKRINRKAPSRLIQKNLPIIFIAYDILEINGEDQRDSNLEIRRNSLEKHLYNWLNESKE
ELSNIFKISDLIYPKNWEEVETFKNNSRDNGTEGLVIKNKKSIYTPGRKKGLWWKYKVDP
MQLDAVLIYAKGGSGIRAGLYTDYSFALWKDGELIKFASAYSGLNNTEIKELDRWIRQNT
IDRFGPVRSVRPEMVFEISFENIQISKRHKSGIAVRFPRITKWRKDKLIKDADTLENAQK
LMLNK

NT seq 1638 nt +upstreamnt +downstreamnt
atgagcctaaaaaagttttcagaattatttataaatttagactcttgtaatagcacaaat
aaaaagattggaattttacaaaactatttttcttcaaatgaggctttagaaaactcatgg
acaatatatttacttacaggaaaaaacaataagagatttataagtggaagatcccttaaa
actttattttcagaaatttatgaataccctttatggttaattgattcttgttatttaaaa
gttggagattctgcagaagttatatccctattattaaggaatgtgatcacagaaaaaaat
acaaaatatcaagatggttctctgcatgaattattaaataaatcttttccagagttatcc
attcttaaagaagatgagaagaagttaagagtgaaagaaatttgggaaactattccaaaa
gaaaatcttctagttataaataaaatcttaactggtacttttagagttggagtctctata
ggattgataacaaaatctatagccaagctaataaatatagatgaagcaataatttctcat
agattaatgggcgattttattccctctgaagaatcatataaattattaatagataaaaaa
ataaatccttcagagttaaattacaaaccttacccctttcttctagctaatacttttgaa
aagaaaattatagataaatcaactaacgattttcagtttgaatggaaatgggatggaatc
agaattcaattaataaaaaggtcaggaaaagtttcaatatggacaagaggtcaagattta
gtaaataaatctttccctgaattagtagaaaaaatctcatctatcaaagatgactttgta
atagatggtgaattattagtctgggattttaagaagagtcttcctcttaatttctctttg
cttcaaaaaagaattaatagaaaggcgccatcaagattaattcaaaaaaatttacctatt
atatttattgcctatgatattttagaaataaatggagaagatcaaagagactcaaattta
gaaatcagaagaaacagtttagaaaaacatttatataattggttaaatgaaagtaaagaa
gaattatctaatatttttaaaataagtgatttaatatatccaaaaaattgggaagaggta
gaaacttttaaaaacaattctagagataatggaacggagggattagttattaaaaataaa
aaatcaatctacactccaggcagaaagaaaggtctttggtggaaatataaagttgatcca
atgcaactcgatgcagtcctcatttatgccaaaggcgggagtgggataagagcaggtcta
tatactgactatagttttgctctttggaaagatggagaattaatcaaatttgctagtgct
tattctggattaaacaacactgaaattaaagagttagatagatggattagacaaaatact
attgatagatttggacctgttagatcagtaagaccggaaatggtcttcgaaatttccttc
gaaaatatacaaatttcaaaacgtcataaatcaggaattgctgttagatttccaagaata
actaaatggaggaaagataagctaattaaagatgctgataccttagaaaacgctcagaaa
ttaatgttaaataaataa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-PMM (1)   
   CYORF-PMM (1)   
   JGI-PMM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF

DBGET integrated database retrieval system