KEGG T00143: PMT1507

Prochlorococcus marinus MIT 9313: PMT1507

Entry

PMT1507 CDS T00143

Gene name

rpoB

Definition

DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology

K03043

DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Organism

pmt Prochlorococcus marinus MIT 9313

Pathway

pmt00230	Purine metabolism
pmt00240	Pyrimidine metabolism
pmt01100	Metabolic pathways
pmt03020	RNA polymerase

Module

pmt_M00183

RNA polymerase, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:pmt00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:pmt00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:pmt03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

CyanoBase:

CYORF:

UniProt:

Position

complement(1593258..1596551)

AA seq 1097 aa
MSSSAIQVAKTATYLPDLVEVQRASFKWFLDEGLIEELDSFSPITDYTGKLELHFVGNEY
RLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQEVFIGELPLMTERGTFIING
AERVIVNQIVRSPGVYFKDEQDKNGRRTYNASVIPNRGAWLKFETDKNDLLHVRVDKTRK
INAHVLMRAMGLSDNDVIDKLRHPEYYKKSIEAANEEGISSEDQALLELYKKLRPGEPPS
VSGGQQLLQTRFFDPKRYDLGRVGRYKINKKLRLTIPDTVRTLTHEDVLSTLDYLINLEL
DVGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETDSLTPAQLVNP
KPLVAAVKEFFGSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHY
GRLCPIETPEGPNAGLINSLATHARVNQYGFIETPFWKVENGRLIKEGDPIYLSADLEDE
CRVAPGDVATDADGQILAELIPVRYRQDFEKVPPEQVDYVQLSPVQVISVATSLIPFLEH
DDANRALMGSNMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISRVNGMVTFVDATAII
VRDEDGVDHTHYLQKYQRSNQDTCLNQRPIVCQGDAVIVGQVLADGSACEGGEIALGQNV
LVAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEARQTKLGPEEITREIPNVAEE
SLGNLDEMGIIRIGAFVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRV
PSTERGRVVDVRIYTREQGDELPPGANMVARVYVAQRRKIQVGDKMAGRHGNKGIISRIL
PREDMPFLPDGTPVDIVLNPLGVPSRMNVGQVFECLMGWAAANLDCRVKVVPFDEMYGAE
KSQQTVEAYLKEAAKQPGKEWVYNPDNPGKLQLIDGRSGEPFDQPVTVGYAQILKLVHLV
DDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALEAYGAAYTLQELLTVKSDDMQ
GRNEALNAIVKGKPIPRPGTPESFKVLMRELQSLGLDIAVYTDEGKEVDLMQDVNPRRST
PSRPTYESLGVADYDED

NT seq 3294 nt +upstreamnt +downstreamnt
atgagcagcagcgcgattcaggtcgccaagaccgccacctacctgcctgatctcgttgaa
gttcagcgggcgagcttcaagtggtttcttgatgagggcttgatcgaggagttggatagc
ttttctcccatcactgactacacaggcaagcttgaactccattttgttggcaatgaatac
cgattgaagcggcctcgccacgatgttgaagaggccaagcgccgtgatgcgactttcgct
tcacagatgtatgtgacctgtcgcttagtgaataaggaaacaggtgagattaaggagcag
gaggtgtttattggcgagcttcctctgatgactgagcgaggtacgttcattatcaatggt
gcagagagggttattgttaatcagattgtgcgcagcccaggggtatattttaaggatgaa
caggataagaatggacggcgaacatacaatgccagtgttatccctaaccgtggtgcctgg
ctaaagttcgaaacagataaaaacgaccttctgcatgtgcgtgttgataaaacacgcaaa
attaatgcccatgttttaatgcgggccatggggctatcagataacgatgtaatcgataag
cttcgtcaccccgagtattacaagaagtctattgaggctgcaaatgaggaaggaattagt
tcagaggatcaggctttgcttgagctttataaaaagcttcgtcctggtgagcctccttca
gtaagcggtggtcaacagcttctgcagacccgattttttgatcccaagcgttacgacctt
ggccgagttggccgttacaagattaataaaaagctgcgtctaacaatcccggatacggtg
cggaccctcacccatgaggatgtgctctcaacccttgattatctgatcaatttagaactc
gatgtgggtggtgccagccttgatgacattgatcacctgggcaatcgtcgagtgcgttca
gtgggtgaacttttgcagaaccaggtccgggttggtctcaatcgcctggagaggatcatt
aaagaacggatgacggtgggagagaccgattcgctcacgccagctcagttggtgaacccc
aagcctctcgttgcagctgttaaggagttcttcggttccagtcagctgagtcagttcatg
gatcagacgaatccattggctgagctcacccacaaacgtcgtatctcagctctggggcca
ggtggcctcactagggagcgtgctggcttcgcggtgcgtgatattcacccttcccattat
ggccgtctctgcccaattgagacaccggaaggcccgaatgcaggtttgatcaattcactg
gctacccacgctcgggtcaatcagtatggcttcattgagactcccttttggaaggttgag
aacggtcgcctgatcaaggagggagaccccatctatttatcagccgatcttgaggatgag
tgtcgtgtagctcctggtgatgtggccacggacgccgatggacagattctcgctgaatta
attccagtgcgttatcgccaggacttcgaaaaagttccacctgagcaagtggattatgtg
cagctctcgccggtgcaggtgatctctgtcgccacctccttgattcctttcctcgagcac
gatgacgccaatagggctctgatgggatcaaatatgcaacggcaggccgtaccactgttg
cggcctgagcggcctttggtggggacgggtctcgaaactcaggtggctcgtgattccggg
atggtgcccatctcccgcgtgaatggcatggtcacattcgtggatgccactgcgatcatc
gtccgggatgaggatggggttgatcacacccactacctgcagaagtatcagcgttcaaat
caggacacctgccttaatcagcgtccgattgtctgccagggtgatgcggtgatcgtgggt
caggttctcgcggatggttcggcttgtgaaggcggtgaaattgctctaggtcagaacgtt
ttggtcgcttatatgccttgggagggttacaactatgaggacgctattcttgtcagcgaa
cgactagttaaggacgacctctacacctcggtgcatatcgagaagtatgagatcgaggca
cgacagacaaagcttggccccgaagagatcaccagggagatacccaatgttgccgaggaa
agccttggcaatcttgatgaaatgggcatcattcgcatcggtgcttttgtcgagagtggc
gacattctggtgggcaaagtgacacctaaaggtgagtcagatcagcctccagaagagaag
cttttgcgtgccatttttggtgaaaaagcgcgcgatgtgcgtgataactctctacgcgtt
cccagcactgagcgaggacgagttgtggacgttcgtatttacactcgtgaacagggtgat
gagcttccccctggcgccaatatggtcgctcgagtgtatgtggctcagcgtcgcaagatc
caggttggcgacaagatggccggtcgccacggcaataaaggcatcatcagtcgcattctt
ccccgcgaagacatgccttttctgcccgatggcactccagttgacatcgttttgaatcct
ttgggcgtgcccagccggatgaatgtgggtcaggtgtttgagtgcttaatgggatgggca
gcagccaatctcgactgtcgggtcaaggtggtgccttttgatgaaatgtatggagctgaa
aagtcccagcagacagtggaggcttatctcaaggaagctgccaaacagccaggtaaggag
tgggtctacaaccctgacaatcctggcaagcttcaattgattgatgggcgttcgggtgaa
cctttcgaccagccggtgaccgttggctatgcacagattctgaagcttgttcatttggtt
gatgacaagatccatgctcgttcaacaggtccctattcactggtaacccagcaacctctt
ggcggtaaggctcaacaaggtggccaacgtttaggggagatggaggtgtgggctctggag
gcctatggcgccgcttacaccctgcaagagctgctgactgttaaatcagacgatatgcag
ggtcggaatgaagccctcaatgcaatcgtcaagggcaaacctatccccaggccggggaca
cccgagtctttcaaggtcttgatgcgtgagcttcagtctctagggctcgatatcgctgtt
tataccgatgaaggcaaagaagtggatctgatgcaggatgtgaatccccgccgtagtact
cctagtcgacccacttacgaatcccttggagtagcggattacgacgaagattaa

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   CYANOBASE-PMT (1)   
   CYORF-PMT (1)   
   JGI-PMT (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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