KEGG   Prunus mume (Japanese apricot): 103324642
Entry
103324642         CDS       T03196                                 
Name
(RefSeq) uncharacterized protein LOC103324642 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103324642
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pmum03000]
    103324642
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103324642
   04121 Ubiquitin system [BR:pmum04121]
    103324642
Enzymes [BR:pmum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103324642
Transcription factors [BR:pmum03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    103324642
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103324642
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103324642
Ubiquitin system [BR:pmum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103324642
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 Nup35_RRM zf-UDP Rtf2 zf-RING_2
Other DBs
NCBI-GeneID: 103324642
NCBI-ProteinID: XP_008224953
Position
LG1:6007648..6016654
AA seq 1034 aa
MSDQGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRTPY
DKEKIVGTAGKCERLVAEINTEKKMKSQKAKVKSTEGRKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQRREYFGQYGKVLKVSMSRTAAGIIQQFPNNTCSVYITYSKEEEAVRCIQNVH
GFLLDGRSLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRV
QQITGTANSMQRRSGSVLPPPLDDYCNSSSTSAGGPIIKNGSSNTGSLLRGSPPNGSSGR
SIALPAAASWGTRGSNCQPPATSIINSNGHTKQKPDVNCTLPFSSAAVATTQASVLHSDA
GKRSALNDESQTMHAKGKPESLKIVRQNSGVDCQNDLSDEPAAPDEAPASVNGSSPLSSP
QTTKDNDRGSSMQPNISNATNHSHISYGSRHEKENIVSTEEVVQDRNSMVEHSGVVRSNS
SLSDNSVIKSPRNQGLQQYCAEQSREPPITAVTAVNAMCVAREQANWISESQAQLVPNAS
FEVEEDVLSFDNQRLKDPEVSRSTYLPSLANAVHVSNHSRSPLLHSEAYGAVYSNVDRPF
VDNKMRDSSLLSSSSISVTSNGYPENLVSRSSGSERPLEHSFLLPNEGPGKHSGRFLDDA
ANADFSAAVDKGESSIISNILSMDFDTWDDSIASPQHFSKLLGETDRQPGALKMSSPWKV
QNNNQSRFSFARQEDSKNQAFDVQSSLNVVGQFSNNQSFHHGFSENRDLGLENLGIGNGF
SSSSYEEPENHGSNHLALSSNKLSVVSRAQISAPPGFSVPSRAPPPGFTSHERVDQEFDS
LAGNHLYDTSSLLRNAYQPQATGNIGSSGDIEFMDPAILAVGKGRLQGGLNNPGLEMRSN
FPSQLSAYENDARLQLLMQRSLTPQQNVRFPDFGDGFSHVNDSYGISSMLLDQSQTSSNL
SPFAQLSLQQQSRNRVMSNGHWDGWNEAQGGSTLGMAELLRNERLGFNKYYSGYEDSKFR
MPSSGDLYNRTFGM
NT seq 3105 nt   +upstreamnt  +downstreamnt
atgagtgaccagggagaaaagacttgtcctctttgtgcagaggagatggatttgacagat
cagcaattgaagccatgtaaatgcggttatgagatatgtgtttggtgttggcaccacata
atggacatggctgagaaggatgagacagaggggcggtgtcctgcatgccgcactccttat
gataaggaaaagattgtagggacggctggaaagtgcgagagattggtggctgaaatcaat
accgagaaaaagatgaagtctcagaaggcaaaggttaaatcgactgaaggacggaagcag
ctcagcagtgtgcgagtgattcaaaggaaccttgtttacatagttgggttgcctcttaat
ctggcagatgaagatcttctgcagcgcagagaatattttggtcagtatggcaaggtttta
aaagtttctatgtcccgaactgcagctggtatcattcagcaatttccaaacaatacatgt
agtgtatatattacttactcgaaagaagaggaagcggttcgttgtattcaaaatgtacat
gggttcctcttggatggtagatcgctgagggcatgcttcgggaccacaaagtattgtcat
gcatggctgagaaatgtgccttgcaccaatcctgattgtttgtatctgcatgaggttggg
tctcaggaggacagtttcactaaagatgaaataatttctgcatacactaggagtagggta
caacaaattaccggtactgcaaacagtatgcaacggcgttcagggagtgttttgcctcca
ccactagatgattattgtaacagcagttctacttctgctggaggaccaattattaaaaat
ggttcaagtaatactggaagccttcttagaggttctcctccaaatggaagctctggtaga
tctattgctcttccagctgcagcctcatggggaacacgtggttcaaattgccaaccacca
gctacaagtataataaattcgaatggacatactaaacagaaacctgatgtcaattgcaca
ttgccattttcttcagcagcggttgctactactcaggcttctgtactgcatagcgatgca
ggaaagaggtcagcattaaatgatgaaagtcagactatgcatgctaaaggtaaaccagaa
tcattgaagattgtgagacagaatagtggcgtggattgtcagaatgacctgtctgacgaa
cctgctgcacccgatgaagctcctgcttctgtgaatgggagtagccctttatcttccccc
caaacaaccaaggataatgatagaggcagcagcatgcagccaaacatcagcaatgccacc
aaccatagtcatatatcttacggttcccgtcatgaaaaagaaaacattgtttccactgaa
gaagtggtccaagatagaaattccatggtagaacattctggtgtagtcagatcaaatagt
tcactttctgataattctgtgattaaatcgcctcggaaccaagggttacagcaatattgt
gctgagcagtccagagaacctccaataactgctgtgacagctgttaatgcaatgtgtgtt
gcaagggaacaagccaactggatatcagagtcacaagcacaactagtaccaaatgcatct
tttgaggtggaagaggatgtactatctttcgacaatcagagactcaaggatccagaagtg
agtcgttcaacatatttgcctagtttggctaatgcggtccatgtttcaaatcattctagg
tctccattgttgcatagtgaagcttatggtgcagtttattcaaatgttgatcgtccattt
gttgataacaaaatgagggacagttcacttctatcttcatccagtatttcagtaacatct
aatggttaccctgagaacttggtaagcagatcttctggttcagaaaggccgttggagcat
tcctttctgcttccaaatgaaggcccagggaagcacagtggaagattcctggatgatgca
gctaatgcggatttcagtgctgctgttgacaagggagagagtagcataatctcaaatata
ttatcaatggactttgacacttgggatgactcaatagcgtcaccacagcatttttcgaaa
ttattgggtgaaactgatagacagcctggagctctcaaaatgtcaagtccttggaaagta
caaaataacaatcagtccagattctcttttgcaagacaggaggattctaaaaatcaagca
ttcgatgtacagtcatctctgaatgtcgttgggcagttttctaataaccaatcattccac
catggtttttctgaaaatagagatttaggtttggagaatcttggaattggaaatggtttt
tcatctagctcttatgaagaacctgaaaatcatggcagcaatcatttagctctttcttct
aacaagctttctgtggtttcaagggctcaaatttctgctcctcctggattctctgtgcca
agcagggcaccaccaccaggctttacttctcatgagagagtggatcaggagtttgactct
ctggctgggaatcatttgtatgatacttcctctttgttgagaaatgcatatcaacctcag
gcaactggtaatattggtagctctggggatattgagtttatggatcctgctatattggca
gttggtaaagggcgactgcaaggtgggcttaacaaccccggccttgaaatgagatcaaac
ttcccttcacagttaagtgcctatgaaaatgatgcaaggcttcaactgttgatgcaaaga
tccctcaccccacaacaaaacgttagatttcctgattttggcgatggtttttctcacgtc
aatgattcttatggaatttcttcgatgcttttggatcaatctcagactagcagcaatcta
tccccttttgctcaattgtccctccaacaacagtctagaaaccgggtcatgtcaaatgga
cactgggatgggtggaatgaggctcagggtggaagcactctgggtatggcagagctcttg
agaaatgagagactagggttcaacaagtattattctggttatgaagattcaaagtttcgg
atgcccagttctggtgatctgtataacagaacatttgggatgtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (23)   

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