KEGG   Pasteurella multocida subsp. multocida HN06: PMCN06_0116
Entry
PMCN06_0116       CDS       T01776                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
pmv  Pasteurella multocida subsp. multocida HN06
Pathway
pmv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pmv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PMCN06_0116 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmv03019]
    PMCN06_0116 (deaD)
   03009 Ribosome biogenesis [BR:pmv03009]
    PMCN06_0116 (deaD)
Enzymes [BR:pmv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PMCN06_0116 (deaD)
Messenger RNA biogenesis [BR:pmv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PMCN06_0116 (deaD)
Ribosome biogenesis [BR:pmv03009]
 Prokaryotic type
  rRNA helicases
   PMCN06_0116 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 DRTGG
Other DBs
NCBI-ProteinID: AFF23376
Position
92732..94564
AA seq 610 aa
MTETTMTFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAF
SLPLLAQIDLDKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGGQRYDIQLR
ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQ
HQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFL
EVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNI
EQLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDI
AAAMLMLLQGKQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTPQAMDLY
RIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKTR
VMNKQMQMSFMGASNAGSSRDRDDFADRRGGKRKGRGDEPRFGREDRKFKEKSQRTFNDR
PRRERRERQK
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgactgaaacaacaatgactttcaatgatttaggcttgcctgaatttcttcttaacgcc
gtctctgacttaggctttgaaaccccttctccaattcaacaaagttgtatcccaaacctg
ttaaatgggcatgatgtgctaggtatggcacaaactggaagtggtaaaaccgccgccttt
tcactccctttattagcacaaattgatttagataaaaaatatccacaaatgttagtgatg
gcaccaacacgtgagttagccatccaagtagcagatgcctgtgagcacttttgcaaatat
gcgaaaaataccaatattgttaccctttatggtggtcaacgctatgacattcaattgcgt
gctttacgccaaggtgctcaggttgtggtggggacacctggtcgtattttagatcacatt
cgtcgtggcactttagatttgtctaatttacgttttatggtgttagatgaagcggacgaa
atgttacgtatgggctttattgatgatgttgaaacggtgatggcagaattaccagaacaa
catcagaccgcacttttctcagccaccatgccagatccaattcgtcgtattactaagcgt
tttatgaaagatccgaaagagattaaaattaaatcgacgcaaacgacgaatccagatatt
acacagagttgttggtatgtgcatggtttccgtaaaaatgatgccttattacgtttctta
gaagtagaaaaatttgatgccgcgattatctttactcgtactaaaacggggacattagat
gtaacggaattgttggaaaaacatggtttccgtgccgcagcattaaatggcgatatgaca
caacaattacgtgaacaaacgcttgatcgtttaagaaatggtagtttagatattcttgtg
gcaaccgatgtggcggcgcgtggtttagatgtggaacgcattagcctcgtggtgaactat
gatattccattagatgctgagtcttatgttcaccgtattggtcgtacagggcgtgcagga
cgtacagggcgtgcattgttatttgttgaaccaagagaacgtcgtttattacgtaatatt
gaacaattaactaaaaaaccgattacggaagtcgaagtgccaaatcatgaggtactacaa
gcttgtcgccgtgagaaatttaaagccaaaattacagtccaattagagcatcatgattta
ggactttatcgtagcttactagaagatatgttcaccgcggatcaagatcaggaagatatt
gcggcggcgatgttgatgttgttgcaaggtaaacaaaagcttattttaccagccgatcca
attattgatcgtaaaacttcacgtggtgatcgtggtgagcgtcgtgaacgtggtggacgt
gaaaatccacgttcagcagagcgtcgtggttacggtacaccgcaggcgatggatttatat
cgtattgaagtaggacgtttagatggcgcggaagtccgtcatattgttggggcgattgcc
aatgaaggtgatatcaatagtcgttatattggtcatattaaattatatgatgattacacc
acgattgaattaccacaaggtatgccgaaagaattattaggtgtatttgcgaaaacacgc
gtgatgaacaaacaaatgcagatgtcatttatgggagcgtctaacgcaggttcaagccgt
gatcgcgatgatttcgctgaccgccgtggtggaaaacgtaaaggacgcggcgatgaacca
cgttttgggcgtgaagatcgtaaatttaaagaaaaaagtcagcgcacttttaatgatcgc
ccacgcagagaaagacgtgaacgccaaaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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