KEGG   Paenibacillus mucilaginosus K02: B2K_00850
Entry
B2K_00850         CDS       T02041                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pmw  Paenibacillus mucilaginosus K02
Pathway
pmw03030  DNA replication
pmw03410  Base excision repair
pmw03420  Nucleotide excision repair
pmw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pmw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B2K_00850
   03410 Base excision repair
    B2K_00850
   03420 Nucleotide excision repair
    B2K_00850
   03430 Mismatch repair
    B2K_00850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmw03032]
    B2K_00850
   03400 DNA repair and recombination proteins [BR:pmw03400]
    B2K_00850
Enzymes [BR:pmw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B2K_00850
DNA replication proteins [BR:pmw03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B2K_00850
DNA repair and recombination proteins [BR:pmw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B2K_00850
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B2K_00850
   MMR (mismatch excision repair)
    DNA ligase
     B2K_00850
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B2K_00850
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH RNA_ligase DNA_ligase_ZBD
Other DBs
NCBI-ProteinID: AFH59289
UniProt: I0BA92
Position
182046..184064
AA seq 672 aa
MPSALETMQALIDEINKHNYLYYTLDQPSISDAEWDALYKRLQELEAQTGTILPDSPTLR
VGGELLKGFESHRHMARLWSLDKAQTHDDLMAWHARVQKLVNDYNSKHEDDPLPPPSFVV
ELKFDGLTLNLTYDKGELVQAATRGSGVVGEGILANVKTIRSIPLRIPYTEGKIEVQGEG
IMNLSVLEAYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNIGYSESLQFTDH
QEMVEFLRENRFKVSPHVKFFDSIEAVEVELQHLVSIRHTFDFLIDGLVVKVNDMRTREV
LGYTDKFPRWAVAYKFEAEEAVTTLLGVTWNVGRTGKVTPLARVEPVDLAGVTVQNCTLN
NMDDIERKNLKHALGSLIYIRRSNDVIPEILGKVTEEADGEEIVPPSQCPYCGFPLEKKG
PHLFCLNRYDCRPQLVGRIAHFASRDAMEIDTFSEKTAEQLYDSLEVRDPSDLYYLTFDQ
LVGLERFGKKKAENLLAALERSKQCDLASFLYALGIPNTGKTTTKELADHYRSLEKVMNA
EPEELVTLPDIGGIVAESISGFFRDPAMLRSIERLLAAGVAPTAEEATVVVDENSEFFGK
TVVLTGTLSSMGRDECAKKLEKLGAKVTGSVSKKTDIVIAGESAGSKLTKAQELGIRIIE
DEQELLRLLGEA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atgccctcggctttggagacgatgcaggccctgatcgatgagatcaataaacataattac
ttgtattacacgctcgaccagccttccatttcggatgcggaatgggacgcgctgtacaag
cggctgcaggagctggaggcacagaccggcacgattttgccggactccccaactctgaga
gtcggcggggagctgctgaaaggcttcgaatcccaccggcacatggcacggctctggagt
ctcgataaggcgcagacccatgacgacttgatggcttggcatgcgcgtgtccagaagctt
gtgaatgactataacagcaagcacgaggacgacccgctgcctccgccgtcctttgtggtg
gagctgaagttcgacggcctgacgctgaacctgacgtacgacaagggggagctcgtccag
gcggccacccgcggcagcggtgtggtgggagagggtatcctggcgaatgtgaagacgatc
cgctccatccctctgcgcattccgtacacggagggcaagatcgaagtgcagggtgagggc
atcatgaacctgtcggtgcttgaggcgtacaaccagacggccgcggagccgctgaagaac
gcccgcaatgcggcggcaggcgccctccgcaacctcaatcccaaagtcaccgcggagcgc
aagctcaatgcttatttttacaatatcggctactcggagtccctgcagtttaccgatcat
caggagatggtcgagttcctgcgtgagaaccgcttcaaggtcagtccccacgtcaaattc
ttcgattcgatcgaagcggtggaggtcgagctgcagcatctcgtatcgatccgccatacg
ttcgacttcctgattgacgggctcgtggtcaaagtgaacgatatgcgcacacgcgaagtg
ctgggctataccgacaaattccctagatgggccgtcgcctacaagttcgaagccgaagaa
gccgtcacgacgctgctcggcgtgacgtggaacgtgggccggacaggcaaggttacgcct
ttggcacgggtggagcccgtcgatctcgccggggtaaccgtgcagaactgcacgctcaat
aacatggacgatatcgagcggaagaacctgaagcatgcgcttggctcgctgatctatatc
cgtcgttcgaacgacgtcattccggagattctcgggaaggtgacggaggaagccgacggg
gaagagatcgtgcccccaagccagtgcccttactgcggcttcccgctggagaagaagggg
ccgcatctgttctgcctgaaccggtatgactgccgtcctcagctggtggggcgcatcgcg
cactttgcttcgcgtgacgcgatggagatcgacacgttcagcgagaagaccgccgaacaa
ctctatgactctctcgaagttcgcgatccctccgatctctattacctgaccttcgatcag
cttgtcggactcgagcggttcggcaagaagaaggcggagaacctgctcgcggcgctggag
cgcagcaagcagtgcgacctcgcttcgttcctgtatgcgctgggaatccccaataccggc
aagacgacgaccaaagagctggccgatcattaccgcagcctggagaaggtcatgaatgcc
gagccggaggagctcgttactctgccggatatcggaggaattgtcgccgagagcatctcc
ggcttcttccgggatccggccatgcttcgcagcatcgagcgcctgctggccgccggggtt
gccccgaccgcggaagaggcgacggtggtggtcgatgagaacagcgaatttttcggcaaa
acggttgtcctgaccggcacgctttcctctatggggcgtgacgagtgtgccaagaagctg
gagaagctcggggccaaggtaaccggcagcgtgtcgaagaagacggatatcgtcatcgcc
ggggaaagcgccggaagcaaactgacgaaggcacaggagctcgggatccgcattatcgag
gatgaacaagaactgcttcgactgctgggagaagcttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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