KEGG   Persephonella marina: PERMA_0777
Entry
PERMA_0777        CDS       T00870                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
pmx  Persephonella marina
Pathway
pmx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PERMA_0777 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmx03400]
    PERMA_0777 (uvrB)
DNA repair and recombination proteins [BR:pmx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PERMA_0777 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PERMA_0777 (uvrB)
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII DEAD UVR UB2H Helicase_C_2 DUF3867 AAA_22 AAA_30 AAA_7 Kinesin AAA_16
Other DBs
NCBI-ProteinID: ACO04676
UniProt: C0QPG8
Position
complement(729135..731123)
AA seq 662 aa
MGRTPFKIDMPFPPAGDQPKAINQLYENLKQGVKEQVLLGATGTGKTFTIGNVIEKYGKP
TLVLTHNKTLAAQLYRELKELFPDNAVEYFVSYYDYYQPEAYVPEKDLYIEKDSSINDAI
DRLRHSATKSLIERPDTIVVASVSCIYGLGTPEFYEKLRLHLFVGQQIERQDLLKRLVEL
QYVRDDFSFKRGTFRVKGDTVEILPSHSEDIILRVEFFGDEIESITELDIFNRDIKRKLN
TTVVFPASHYVIPRPDMIEAIKQIKADLEREVEEFRKQGKEIEANRLWQRTNYDIEMMLE
LGTCKGIENYSRYFDGRKPGEPPYTLMDYFPDDFLLIVDESHVTIPQVRAMYNGDRRRKD
NLVKYGWRLKSAYDNRPLKFEEFVEKIQRAIYVSATPAEWEIERSKGVIVEQIIRPTGLL
DPEVVVKPTEGQIDDLISEIWNIKERNERAIVITLTKKMAENLADYLEERDIKAIYLHSE
IDTIERVKIIKELREGKYDVIVGVNLLREGIDMPEVSLVAVLDADKQGFLRSATALIQII
GRAARNVNGKAILYADTITPAMEKAINETERRRKLQKEYNERYGIEPKTVSKEVKDLISL
EEIGIYEMYENLPEDIESEEDLLKQIESLEKQMWEYAEKWEFEKAAEIRDKIEKLRSLIG
AF
NT seq 1989 nt   +upstreamnt  +downstreamnt
atgggaagaacgcctttcaagatagatatgccatttcctccagcaggagatcagccaaaa
gccataaatcagctttatgaaaacctaaaacagggagtaaaagagcaggttctattggga
gccactggaacaggaaagactttcactatcggcaatgttattgaaaaatatggaaaacct
actttagttttgacccataacaaaactctcgccgcacagctttacagagaacttaaagag
cttttcccagataatgctgttgagtactttgtctcatactacgattactaccagcctgag
gcttatgttcctgaaaaggatctttatattgaaaaggacagttcaataaatgatgctata
gacagactgagacactcagcaacaaaaagtcttatagagagacctgatacgatcgttgtt
gcctctgtatcatgtatatacggtcttggaacaccagagttttacgaaaaattaagactc
catctttttgttggacagcagattgaaaggcaggatcttctaaaaagacttgttgaactt
cagtacgtaagggatgatttttcgtttaaaagaggaacattcagggtaaagggagacact
gtagagatactcccatctcactcagaggatattattctaagggttgagtttttcggtgat
gagatagagagcataacagagcttgatatattcaacagggatataaaaagaaagctgaac
actacagttgtatttcctgcaagtcattatgttataccgagacctgatatgatagaggct
ataaaacagataaaggctgatcttgagagggaggttgaggagttcagaaagcaggggaag
gagattgaggcaaacaggctgtggcagagaactaactacgatatagagatgatgcttgaa
cttggaacatgtaaaggtattgagaactactcaagatactttgatgggagaaaaccagga
gagccgccttacacacttatggactactttcctgatgactttttactgatagttgatgag
tctcacgtaacaatcccacaggttagagccatgtacaacggagatagaagaaggaaggac
aacctcgttaaatacggatggaggttaaaatcagcctatgacaacagacctttaaaattt
gaggagtttgttgaaaagatacagagagctatatacgtatctgcaacaccggcagaatgg
gagatagagagatcaaaaggtgttattgtggagcagataataagacctacaggactttta
gatcctgaggtggtcgtaaaaccaacagaaggacagattgatgatcttatatcagagatc
tggaatataaaagagagaaatgagagagccatagttataacactcacaaaaaagatggct
gagaaccttgcagactaccttgaggaaagggatataaaggctatatacctccattcagag
atagataccatagaaagggtaaagataataaaagagcttagagaaggaaagtacgatgtt
atagttggcgttaatctcctcagggaaggtattgacatgcctgaggtttcacttgttgca
gttcttgatgcagataaacagggatttttaagatcggcaacagctcttatccagatcata
ggaagagcagcaaggaatgtaaacggaaaggctattctttatgcagatacaataacacct
gctatggaaaaggctataaatgagacggagagaagaaggaaattacagaaggagtacaat
gaaaggtacggtattgaacctaaaactgtatcaaaagaggtaaaagatcttatatcactt
gaggagataggaatatatgagatgtatgaaaacctgcctgaagatatagaaagtgaagag
gatcttttaaaacagatagaaagccttgaaaaacagatgtgggaatatgctgaaaaatgg
gagtttgagaaggctgcagagataagggataaaattgagaaactacgatcccttatagga
gcattttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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