KEGG P.mendocina: Pmen

Pseudomonas mendocina: Pmen_1934

Entry

Pmen_1934 CDS P.mendocina

Gene name dnaE2

Definition error-prone DNA polymerase (EC:2.7.7.7)

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway pmy00230 Purine metabolism
pmy00240 Pyrimidine metabolism
pmy01100 Metabolic pathways
pmy03030 DNA replication
pmy03430 Mismatch repair
pmy03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:pmy00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:pmy00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:pmy03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:pmy03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:pmy03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha PHP tRNA_anti

Other DBs NCBI-GI: 146306963
NCBI-GeneID: 5110062
JGI: Pmen1934
UniProt: A4XTN0

Position complement(2125809..2128889)

AA seq 1026 aa
MTPDYAELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETG
LALIVGSEMPIEGGPKLVLLAEDLAGYQALCRLITVARRRAEKGRYRLLREDFDTPLAGL
LAIWLAEPQASDSEGAWLRQRFADRLWLGIELHRGADDAARLRQLQALAARLQIPALACG
DVHMHARGRRALQDCMTAIRQHLPVAEAGAWLFPNGERHLRRREELAELYPQELLDETLR
VAARCHFELDQLKYQYPHELVPAGHDASSWLRHRVEEGLRWRWPDGASTKVRTQVEHELQ
LITELKYESYFLTVHDIVSWARKQHILCQGRGSAANSTVCFALGITELNPDNSGSRLLFE
RFLSRERNEPPDIDVDFEHERREEVIQYVFRRYGRQRAALTAVASTYHGAGALRDVAKAL
GLPPDQVGALADCCGRWSDHMPDAERLREAGFDPDSPSLHRILTLAGELIGFPRHLSQHP
GGFVISEHPLQTLVPVENASMAERTVIQWDKDDLDLVGLLKVDILALGMLSALRRCFALI
ERYRGTRWTLASLPQEDAATYAMISRADTVGVFQIESRAQMAMLPRLRPKTFYDLVIQVA
IVRPGPIQGDMVHPYLRRRNDEEPVEYPSDELRPVFARTLGVPLFQEQVMELAMVAADYS
PGEADELRRSMAAWKRHGGLEPHRQRLTSRMLEKGYTAEFTARIFRQIEGFGSYGFPESH
AASFALLTYASCWLKCHEPAAYACALVNSWPMGFYSPDQVLQDARRHGIEVRPADVRHSA
WDCSLEPSDGEQPAIRLGLRLLRGFREEDALRIEATRQAAPFTDVDDLCRRATLDARARE
CLADAGALRGLAGNRYRARWAVAGVEPQLPLFAGHSSREEPVALPRPTVGEDLLTDYATF
GTTLGPHPLALLRERLRAKRCRSSHELCTVEHGRPVSVAGLVIGRQRPQTASGVIFVTLE
DEFGMVNVVVWHDLAERQRRVLLQSRLLRIDGHLESADGVRHVIAGRLTDLSPLLTGLDV
KSRDFH

NT seq 3081 nt +upstreamnt +downstreamnt
atgacgcccgactatgccgagctgcactgcctgtccaatttcagctttcaacgtggagcc
tccagcgcccgcgagctgttcgagcgcgccgcgcgcctcggctaccgagccctggcaatc
accgacgaatgcacgctcgccggcatcgtgcgcgcctggcaggcggccagggagaccggc
ctggcgctgatcgtcggcagcgagatgcccatcgagggcggccccaagctggtgctgctg
gccgaggatctggccggttaccaggcgctgtgccggctgatcaccgtcgcccggcgccgc
gccgagaagggtcgctaccgcctgctgcgcgaggacttcgacacgccgctggccggcctg
ctggcgatctggctggccgaaccgcaggccagcgacagcgagggcgcctggttgcgccag
cgttttgccgaccgcctgtggctgggcatcgaactgcaccgcggcgccgacgatgccgcc
cgcctgcgccagttgcaggccctggccgcgcgcctgcagattcccgccctggcctgcggc
gacgtgcatatgcacgcccgcggccgccgcgccctgcaggactgcatgaccgccatccgc
cagcacctgccggtggccgaggccggcgcctggctgttccccaacggcgagcgtcacctg
cgccggcgcgaggagctggccgagctgtatccgcaggaattgctcgacgagacgctacgg
gtggccgcgcgctgccacttcgagctcgaccagctgaaatatcaatacccgcacgagctg
gtgccggccggccacgacgcctcctcatggctgcgtcatcgggtcgaagaaggcctgcgc
tggcgctggccggatggcgccagcaccaaggtgcggacgcaggtcgagcacgagctgcag
ctgatcactgagctgaaatacgagagctactttctcaccgtgcacgacatcgtcagctgg
gcccgcaagcagcacatcctctgccagggccgcggctcggcggccaactcgaccgtgtgc
ttcgccctcggcatcaccgaactgaatccggacaactcgggcagccggctgctgttcgaa
cgctttctctcgcgcgagcgcaacgagccgccggatatcgacgtcgacttcgagcacgaa
cgccgcgaggaagtcatccagtacgtgtttcgccgctatggccgccagcgggcggcgctc
accgcggtggccagcacctaccacggcgccggcgcgctgcgcgacgtggccaaggcgctc
ggcctgccgcccgatcaggttggcgccctggccgactgctgtggacgctggagcgaccac
atgccggacgccgagcgcctgcgcgaggccggcttcgacccggacagcccttcgctgcac
cgcatcctgaccctggccggcgagctgatcggctttccccgccacctgtcgcagcacccg
ggcggcttcgtcatctccgaacacccgctgcagaccctggtgccggtggagaacgccagc
atggccgagcgcaccgtgatccagtgggacaaggacgacctcgacctggtcggcctgctc
aaggtcgatatcctcgccctcggcatgctcagcgcgctgcgccgctgcttcgccctgatc
gagcgctaccgcggcacgcgctggaccctggccagcctgccgcaggaggatgcggcgacc
tacgccatgatcagccgcgccgacaccgtcggcgtgttccagatcgagtcgcgcgcgcag
atggccatgctgccgcgcctgcgcccaaagaccttctacgacctggtgatccaggtggcc
atcgtccgccccgggccgatccagggcgacatggttcatccctatctgcgccggcgcaac
gacgaggagccggtggaatatccttcagacgaattacgaccggtgttcgcacgcaccctc
ggcgtgccgctgtttcaggagcaggtgatggagctggccatggtcgccgccgattacagc
cccggcgaggccgacgagctgcgccgctcgatggccgcctggaagcgccacggcgggctg
gagccgcatcgccagcggctcacctcacgcatgctggaaaaaggctacacggcggaattc
accgcgcgcatcttccgccagatcgagggtttcggcagctacggcttccccgaatcccac
gccgccagcttcgccctgctcacctacgccagctgctggctgaaatgccacgagccggcc
gcctacgcctgcgccctggtcaacagctggccgatgggcttctacagccccgaccaggtg
ctacaggacgcccgccgccacggcatcgaggtacgcccggcagacgtgcgccacagcgcc
tgggactgcagcctggagccaagcgacggcgagcagccggcaattcgcctggggctgcgc
ctgctgcgcggctttcgcgaggaggatgccctgcgcatcgaggcgacgcggcaggcggcg
cccttcaccgatgtggacgatctgtgccgacgcgccacactggatgcccgcgcgcgcgaa
tgcctggcggacgccggcgccctgcgcggcctggccggcaaccgttatcgcgcccgctgg
gcggtggccggagtggaaccgcagctgccgctgttcgccggccattccagccgtgaagaa
cccgtggcgctgccacggcccacggtcggcgaagacctgctgacggattacgccaccttc
ggcaccaccctcggcccgcacccgctggcgctgctgcgcgaacgactgagggccaaacgc
tgccgcagctcgcacgaactgtgcacagtcgagcacggccgcccggtcagcgtcgccggc
ctggtgatcggccgccagcgcccgcagaccgcgagcggagtgatcttcgtcaccctggaa
gacgagttcggcatggtcaacgtggtggtctggcatgacctggccgagcgccagcgccgg
gtgctgctgcaatcacgcctgctgcgcatcgacggccacctggaaagcgccgacggcgtg
cgccacgtcatcgccgggcgcctgaccgacctgagcccgctgctgaccgggctcgatgtg
aagagccgggattttcactga

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-PMY (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)

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