KEGG T00510: Pmen

Pseudomonas mendocina ymp: Pmen_1987

Entry

Pmen_1987 CDS T00510

Definition

DNA helicase/exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

pmy Pseudomonas mendocina ymp

Pathway

pmy03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:pmy03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 AAA_19 Helicase_RecD AAA_11 AAA_22 Viral_helicase1 AAA_16 DUF2075 AAA_28 UvrD-helicase AAA_25 PhoH Mg_chelatase AAA_29 NTPase_1 FtsK_SpoIIIE KaiC Abhydrolase_5 T2SE NACHT AAA_18 ADK AAA_5

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2190660..2192690

AA seq 676 aa
MSTMLAPALRDRAELFALLSTWSERGWLRELDRALAQLFAELDPDASPLLLLGAALASHQ
LGQGHVCLDLAATLANPDFTLSLPPEGEDAQEALILPSQVLAGLSLESWLAACAGSSLLE
SEGAPLVLSGACLYMRRYWNYERQVAGDIARRLQASAAAPSDLAARLASLFPEPLVVDGQ
RQTDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMATGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDAANPLPLDVL
VVDEASMIDLEMMASLLGALPVHARLILLGDKDQLASVEAGAVLGDLCREAESGGYSEAT
RTWLESQTGERLDDPALISGNKALAQHIVMLRHSRRFGSGSGIGRLARAVNQGDAQAARA
TLANGADDLHVLRLSGEQDRALERLLIGGLGEAEPRPQGYAHYLQVMQAQRPAPGADPQA
WDRWAGNVLAAFDQFQLLCAVRKGTWGVEALNERTAEALVRRGLLEQSHGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPPEFPGAPVREVLRVVFPRNDGSGALRHILPSRLGAVET
VFAMTVHKSQGSEFAHCALILPDNLNPVLTKELIYTGITRARHWFSLIESRAGIFEHAVQ
RRVQRRSGLREALEAL

NT seq 2031 nt +upstreamnt +downstreamnt
atgagtacgatgcttgcgccggcgctgcgtgaccgcgccgaactctttgccctgctttct
acctggagcgagcgtggctggctgcgtgagctggatcgggcgctggcgcagctgttcgcc
gaattggatccggacgcttcgcccttgctgctgctcggcgccgcgctggccagccaccaa
ctgggccagggccacgtctgcctcgacctcgcggccacgctggccaatccggatttcacc
ctgtctctgccgccggaaggcgaggacgcgcaagaagcgctgatcctgccgtcccaggtg
ctggccgggctcagtctggagtcctggctggcggcctgtgccggcagctcgctgctggag
tccgaaggtgcgccgctggtgctcagcggcgcctgtctatatatgaggcgttactggaac
tacgagcgtcaggtggctggcgatatcgcccggcgtctgcaggcgagcgctgcagccccg
agcgatctggccgcgcgcctggcttcactctttcccgaaccgctggtggtggacggccag
cgccagaccgactggcagaagctggcctgcgccatggccgcgcaggggcgcttcacgctg
attaccgggggacccggaaccggcaagacgacgacggtggtgcgcctgctggcgctgttg
caggaagccgccatggctactggcgagccgctgcgcctgagcctggcagcgcctaccggc
aaggcagccgcgcggttgaccgaatccatcggcgcgcaggtgcagtccctggcgctggac
gagcgagtgcgtgaacagattccaaccctggtgacgacgctgcatcgtctgctgggcagt
cgtcccggcagccgtcatttccgtcacgatgccgctaaccccttgccactggatgtgctg
gtggtcgacgaagcctcgatgatcgacctggaaatgatggccagcctgctgggcgcgtta
ccggtgcatgcgcgcctgattttgttgggcgacaaggaccaactggcgtcagtggaggcc
ggcgcggtactgggcgacctgtgccgggaggcagaaagcggtggctacagcgaggcgacg
cgtacctggctggaaagccagacgggcgagcggctggacgatccggcgctgatatccggt
aacaaggcgctggcgcagcatatcgtcatgctgcgccactcgcgtcgtttcggcagtggc
tcgggtatcggccgtctggcgcgggcggtgaaccagggggatgcgcaggcggctcgtgcg
actctggcaaacggcgcggacgacctgcatgtgctgcgcctgtccggcgagcaggatcga
gcgctggagcgactgctgatcggcgggctgggcgaagccgagccacgtccgcaggggtat
gcgcattatctgcaggtaatgcaggcgcagcgtcccgccccgggtgctgacccccaggcc
tgggatcgttgggccggtaatgtcctggcagcgttcgatcagttccagctgctctgtgcg
gttcgtaaaggtacttggggtgtcgaagcgctcaatgaacgtaccgctgaagcattggta
cggcgcggcctccttgaacagtcgcatggctggtatgaaggtcggcccgtgctggtaacg
cgcaatgactatagcctggggctgatgaatggcgatatcggcatcgcgctgcgtctgccc
gagccgccggagtttccaggtgcgcctgtacgcgaggtgctgcgcgttgtgttcccgcgc
aacgacggcagtggcgccttgcggcatatcttgcccagtcgtctcggcgcagtggagacc
gtgttcgccatgaccgtgcacaagtcgcagggctcggagttcgcccattgcgcactgatc
ctgcccgacaacctcaatccagtattgaccaaggagctgatctataccggcatcacccgg
gcgcgtcactggttcagcctcatcgagagccgcgccggcatcttcgagcacgccgtacag
cggcgtgtgcagcggcgcagcgggctgcgcgaggcactcgaagcgttatag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PMY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (24)   
   Pfam (24)   
All databases (34)   

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