KEGG T00510: Pmen

Pseudomonas mendocina ymp: Pmen_2503

Entry

Pmen_2503 CDS T00510

Gene name

sucA

Definition

2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)

Orthology

K00164

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Organism

pmy Pseudomonas mendocina ymp

Pathway

pmy00020	Citrate cycle (TCA cycle)
pmy00310	Lysine degradation
pmy00380	Tryptophan metabolism
pmy01100	Metabolic pathways
pmy01110	Biosynthesis of secondary metabolites
pmy01120	Microbial metabolism in diverse environments

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:pmy00020]
Metabolism; Amino acid metabolism; Lysine degradation [PATH:pmy00310]
Metabolism; Amino acid metabolism; Tryptophan metabolism [PATH:pmy00380]

SSDB

Motif

Pfam:

Transket_pyr E1_dh HHH_5

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2766621..2769452)

AA seq 943 aa
MQESVMQRMWDSAHLSGGNAAYVEELYELYLHDPNAVPEEWRTYFQKLPTDGSAATDVSH
STIRDHFVLLAKNSRRAQPVSAGAVSSEHEKKQVEVLRLIQAYRMRGHQAAQLDPLGLWV
RTAPSDLSINHYGLTDADLDTTFRTGELYIGKEEATLREIRDALQQTYCRTIGAEFTHIV
DSGQRNWFAQRLESVRGRPQFSPEVRAHILERVTAAEGLEKYLGTKYPGTKRFGLEGGES
LIPLLDEIIQRSGSYGTKEVVIGMAHRGRLNVLVNTFGKNPRDLFDEFEGKKTEGLSSGD
VKYHQGFSSNVMTPGGEVHLALAFNPSHLEIVSPVVEGSVRARQDRRNDATGDKVLPISI
HGDAAFAGQGVVMETFQMSQTRGYKTGGTIHIVINNQVGFTTSRPEDARSTEYATDVAKM
IQAPIFHVNGDDPEAVLFVTQLAVDYRMQYKRDVVIDLVCYRRRGHNEADEPNGTQPLMY
QQIAKQRTTRELYADALVAAGVQSSDDVQAKIDDYRTALDNGQHVVKSLVKEPNKELFVD
WRPYLGHAWTARHDTRFDLKTLQDLSAKLLEIPEGFLVQRQVAKILEDRQKMGAGGLPIN
WGFAETMAYATLLVEGHPIRMTGQDIGRGTFSHRHAVLHNQKDASTYVPLKNLYEGQPKF
ELYDSYLSEEAVLAFEYGYATTTPNALVIWEAQFGDFANGAQVVFDQFISSGEHKWGRLC
GLTVLLPHGYEGQGPEHSSARLERYLQLCAEHNMQVCVPTTPAQVYHMLRRQVIRPLRKP
LVVLTPKSLLRHKLAISTLEDLAEGSFQTVIGEIDSLDPKKVERMILCSGKVYYDLLEKR
RAEGREDIAIIRIEQLYPFPEDDLAEALAPYKNLKHIVWCQEEPMNQGAWYCSQHHMRRV
ATAHKKGLFLEYAGREASAAPACGYASMHAEQQEKLLQDAFTV

NT seq 2832 nt +upstreamnt +downstreamnt
atgcaagaaagcgtgatgcagcgcatgtgggacagtgcccacctatccggtggcaacgct
gcctacgtggaagagctctacgagctctacctgcacgatcccaacgctgtgccagaagaa
tggcgcacttacttccagaagttgccgaccgacggcagcgctgcaacggacgtatcgcat
tcgaccattcgcgatcatttcgtcctgctcgccaagaattcgcgtcgtgcccagccggtt
tccgccggggccgtcagcagcgagcacgaaaagaagcaggtggaagtgctgcgcctgatc
caggcctaccgcatgcgtggccatcaggccgcccagctcgaccctctgggtctgtgggtg
cgcactgcgccgtctgatctgtcgatcaatcactacggcctgaccgacgcagacctggac
accacgttccgtaccggcgagctgtacattggcaaggaagaggcaacgctacgtgaaatc
cgcgatgcgctgcagcagacatattgtcgcaccatcggcgccgagttcacccacatcgtc
gactccggccagcgcaactggttcgcccagcgcctggagagcgtgcgtggtcgtccgcag
ttctctcccgaggtgcgcgcccacatcctcgagcgcgtcaccgctgccgaaggcctggag
aagtacttgggcaccaaatacccgggcaccaagcgtttcggtctggaaggtggcgagagc
ctgatcccgctgttggacgagatcattcagcgctcgggttcctacggcaccaaggaagtg
gtcatcggcatggcccaccgcggccgtctgaacgttctggtcaacaccttcggcaagaac
ccgcgcgacctgttcgacgagttcgagggcaagaagaccgaaggcctgtcgtccggcgac
gtgaagtaccaccagggcttctcctccaacgtcatgaccccgggtggcgaagtgcacctg
gcgctggcgttcaacccctcgcacctggaaatcgtttccccggtggtcgaggggtccgtg
cgtgcccgtcaggatcgtcgtaacgacgccaccggcgacaaggtgctgccgatttccatc
cacggtgacgcggcattcgccggtcagggcgtggtcatggaaaccttccagatgtcgcag
acccgtggctacaagacgggcggcaccatccacatcgtgatcaataaccaggttggcttc
accaccagccgtccggaagatgcgcgctcgaccgaatacgccaccgacgtggcgaagatg
atccaggcgccgatcttccacgtgaatggcgatgatccggaagccgtgctgttcgtcacc
cagctggccgtcgactaccgcatgcagtacaagcgcgacgtggtcatcgacctggtctgc
taccgccgccgcggccacaacgaggccgacgagccgaacggcacccagccgctgatgtat
cagcagatcgccaagcagcgcaccacccgtgagctctacgccgacgccctggttgccgct
ggcgtgcagagcagcgacgacgtgcaggccaagatcgacgactaccgtaccgcgctggac
aacggccagcacgtggtcaagagcctggtcaaggagccgaacaaggagctgttcgtcgac
tggcgtccgtatctgggccacgcctggaccgcgcgtcacgacacccgtttcgatctgaag
accctgcaggatctgtccgccaagctgctggaaattccggaaggtttcctggttcagcgt
caggtggcgaagatcctcgaagaccgtcagaagatgggcgcgggcggcttgccgatcaac
tggggcttcgccgagaccatggcctacgccacgctgctggtcgaaggtcacccgatccgc
atgaccggtcaggacatcggccgtggtaccttctcgcaccgtcatgcggtgctgcacaac
cagaaggacgcctcgacctacgttccgctgaagaacctgtacgaaggtcagccgaagttc
gagctgtacgattcgtacctctccgaggaagcagttctggccttcgaatacggctatgcc
accaccacgccgaacgcgctggtgatctgggaagctcagttcggcgacttcgccaacggc
gcccaggtggtattcgaccagttcatctccagtggcgagcacaagtggggccgtctctgc
ggtctgaccgttctgctgccgcacggctacgaagggcaggggcctgagcacagctcggca
cgtctggagcgctatctgcagctgtgcgccgagcacaacatgcaggtctgcgtaccgacc
acgccggcgcaggtctaccacatgctgcgtcgccaggtgatccgtccgctgcgcaagccg
ctggtggtgctgacgccgaagtcgctgctgcgtcacaagctggccatctcgaccctggaa
gatctggccgaaggctccttccagaccgtcatcggcgagatcgattcgctggacccgaaa
aaggtcgagcgcatgatcctgtgcagcggcaaggtctactacgacctgctggagaagcgt
cgtgccgagggtcgcgaggacatcgccatcatccgtatcgagcagctctatccgttcccg
gaagatgatctggccgaggcactggcgccgtacaagaacctcaagcacatcgtctggtgt
caggaagagccgatgaaccagggcgcctggtactgcagtcagcatcacatgcgtcgcgtc
gccactgcgcacaagaagggcctgttcctcgagtacgcgggccgtgaggcttcggctgcg
ccggcttgcggttatgcctcgatgcatgccgagcagcaggaaaaactgctgcaggacgcc
tttactgtttaa

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical substance (13)   
   KEGG COMPOUND (13)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PMY (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

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