KEGG   Pseudomonas mendocina ymp: Pmen_4197Help
Entry
Pmen_4197         CDS       T00510                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pmy  Pseudomonas mendocina ymp
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:pmy00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Pmen_4197
Enzymes [BR:pmy01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Pmen_4197
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Pmen_4197
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(4599927..4600739)
Genome map
AA seq 270 aa AA seqDB search
MPELPEVETTRRGIAPYLEGQRVSRVIVRERRLRWPIPEDLDVRLSGQRIECVERRAKYL
LIKAEAGSLIGHLGMSGSLRLVECGLVAAKHEHVDIELESGLALRYTDPRRFGALLWCED
PLRHELLARLGPEPLGGLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGSISRARYLRLAEEIKRILAHAIERGGTTLRDFVGGDGQPGYFQQELFAYGR
AGEFCKVCGTTLREVKLGQRASVYCPRCQR
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaactacctgaagtcgaaaccacccgtcgcggtatcgccccctatctcgaaggg
cagcgcgtcagccgcgtgatcgtgcgcgagcgccgcctgcgctggccgattcccgaggac
ctggacgtgcgtttgtccggccaacgcatcgagtgcgtcgaacggcgcgccaagtacctg
ctgatcaaggccgaggccggtagcctgatcggccatctgggcatgtccggcagcttgcgc
ctggtcgagtgcggcctggtcgcggccaagcacgagcatgtggatatcgagctggagtcc
ggcctggccctgcgctacaccgacccgcgccgtttcggcgcgctgctgtggtgcgaggac
ccgctgcgtcacgaactgctcgcccggctcgggcccgaacccctgggcggcctgttcgat
ggcgagcggctgttccagctctcgcgcggccgcagcatggcggtcaagcccttcatcatg
gacaacgcagtggtggtgggggtgggcaatatctatgcgaccgaggcgttgttcgccgcc
ggcatcgatccgcgccgcgaagccgggtcgatctcgcgggcgcgctacctgcgcctggcc
gaggagatcaagcgcatcctcgcccatgccatcgagcgtggcggcaccacgctgcgcgac
ttcgtcggcggcgatggccagcccggctacttccagcaggagctgttcgcctacggccgc
gctggcgagttctgcaaggtctgcggcactacgctgcgtgaggtcaagctgggccagcgg
gcgagtgtctactgtcccaggtgtcaacgttga

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