KEGG   Polaromonas naphthalenivorans: Pnap_1563
Entry
Pnap_1563         CDS       T00459                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
pna  Polaromonas naphthalenivorans
Pathway
pna03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pnap_1563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pna03400]
    Pnap_1563
DNA repair and recombination proteins [BR:pna03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pnap_1563
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Pnap_1563
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 AAA_16 AAA_22 Kinesin AAA_25 Microtub_bd DUF87
Other DBs
NCBI-ProteinID: ABM36877
UniProt: A1VMJ9
Position
1651193..1653301
AA seq 702 aa
MPETMEVIPEAADLAGVGQFIRFPDSPFELFQPYLPAGDQPQAIAKLVEGVRDGEAFQTL
LGVTGSGKTFTMANVIARLGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQ
PEAYVPQRDLFIEKDSAINEHIEQMRLSATKSVLERRDTIIVATVSAIYGIGAPEDYTQM
RFIARTGDKMGQRDVIARLIRMQYSRNEQDFSRGTFRVRGDVIDIFPAEHSELAIRIELF
DDEIESLQLFDPLTGRIRQKIPRFVVYPKSHYVTPRDKVLAAVETIKLELSERVGQFIAE
GKLVEAQRIEQRTRFDLEMLGEIGHCKGIENYTRHLSASAPGSAPSTLCDYLPKDSVMFL
DESHVMIGQLNAMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFESKVRQAIFVSATPA
AYENEHAGQVVEQLVRPTGLVDPQVEVRPATHQVDDVLQEIRIRVEINERVLITTLTKRM
AEQLTDYLTENGVKVRYLHSDVETVERVEILRDLRLGTFDVLVGINLLREGLDIPEVSLV
AILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRVTDSMKMAMGETERRRNKQLAF
NTLHGITPRSIVKRIKDLIDGVYSEKSGKEAEKLEMQKALVEDMSEKDIAREIKRLEKQM
VEHAKNLEFEKAARVRDQLHVLKQQAFGAPGSDNVVPISSVG
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgccagaaacaatggaagtcattcctgaagcagcggatttagccggcgtgggccagttc
atccgttttcctgattcgccgtttgagttgtttcagccctacctgccggcaggcgaccag
ccgcaggccatcgccaagctggtcgagggcgtgcgcgacggcgaggcctttcaaaccctg
ctgggcgtgaccggctccggcaagaccttcaccatggccaatgtgattgcgcggctgggc
cggccggcgattgtgtttgcgccgaacaagacgctggctgcccagctgtacagcgaattc
cgcgagtttttcccgagaaacgcggtcgagtatttcgtcagctactacgactactaccag
cccgaggcctatgtgccgcagcgcgatctgttcatcgaaaaagactcggccatcaacgag
catatcgagcagatgcggctgtcggcgaccaaaagcgtgctggagcgccgcgacaccatc
atcgtggccaccgtcagcgcgatttacggcattggcgcgcccgaggattacacccagatg
cgtttcattgcccgcactggcgacaagatgggccagcgcgacgtgattgcacggctgatc
cgcatgcagtacagccgcaatgagcaggatttttctcgcggcaccttccgcgtgcgcggc
gatgtgatcgacatttttccggccgagcattccgaactggcgattcgcatcgagctgttt
gacgacgagattgaatcgctgcagctgtttgacccgctgaccgggcgcatccgccagaaa
atcccgcgtttcgtggtctatccgaaaagccattacgtcacgccgcgcgacaaggtgctg
gcggcggttgaaaccatcaagctcgaattgtccgagcgggtagggcagttcatcgccgaa
ggcaagctggtcgaagcccagcgcatcgagcagcgcacccggttcgacctggaaatgctg
ggtgaaatcggccactgcaagggcatcgagaattacacccgccacctgagcgcttcggcg
ccgggctcggcgccctcgacgctgtgcgactatttgccgaaggactcggtgatgttcctc
gacgagagccacgtcatgatcggccagctcaacgccatgtacaacggcgaccgggcgcgc
aagaccacgctggtcgaatacggctttcgcctgcccagcgcgctggacaaccggccgctc
aagttcgaggagttcgagtccaaggttcgccaggcgatttttgtttccgccacgccggcc
gcttacgaaaatgagcatgccgggcaggtggtcgagcagcttgtccggccgacagggctg
gtggacccgcaggttgaagtgcgccccgcgacgcatcaggttgacgatgtactgcaggaa
atccggattcgcgtggaaatcaatgaacgcgtgctgatcaccacgctgaccaagcgcatg
gccgagcagctgaccgattacctgaccgagaacggcgtgaaggtgcgctacctgcacagc
gacgtggaaacggtcgagcgggttgaaattctgcgtgacctgcgcctgggcacttttgat
gtgctggtcggcatcaacctgctgcgcgaagggctggatattccggaagtttcgctggtg
gcgattctggatgccgacaaggaaggttttttgcgctcggaacgaagcctgatccagacg
attggccgtgccgcccgaaacctcaatggccgcgcgattttgtatgccgaccgcgtcacc
gactcgatgaaaatggcgatgggcgaaaccgagcgcaggcgcaacaagcagctggccttc
aacaccctgcacggcatcacgccgcgcagcatcgtcaagcgcatcaaggatttgatcgac
ggcgtgtattccgagaaatccggcaaggaagccgaaaagcttgaaatgcaaaaggcgctg
gtcgaggacatgagcgagaaagacatcgcacgcgaaatcaagcgtcttgaaaagcagatg
gttgaacacgcgaaaaacctggagtttgaaaaagccgcccgggttcgcgaccagctgcac
gtcctgaaacagcaggctttcggcgcgcccggcagcgacaatgtggtgccgatttcatcc
gttggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system