KEGG   Polaromonas naphthalenivorans: Pnap_3258
Entry
Pnap_3258         CDS       T00459                                 
Name
(GenBank) exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pna  Polaromonas naphthalenivorans
Pathway
pna03410  Base excision repair
pna03430  Mismatch repair
pna03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pnap_3258
   03430 Mismatch repair
    Pnap_3258
   03440 Homologous recombination
    Pnap_3258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pna03400]
    Pnap_3258
DNA repair and recombination proteins [BR:pna03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Pnap_3258
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Pnap_3258
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Pnap_3258
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: ABM38556
UniProt: A1VSC8
Position
3459112..3460854
AA seq 580 aa
MKIQVRDVPPRSLWALQQAGIHPLLAQLYAARGVHAAAELDDGLARLLPPSSLKGAREAA
ILLADAMAAGKHICVVADYDCDGATACAVALRGLKLLGATNVGYLVPDRVVDGYGLTAPI
AERVKATGADVLVTVDNGIASIDGVARAKALGLQVLVTDHHLPALFNEKIGLPDADVIVN
PNQPGCGFESKSMAGVGVMFYVLLALRAELRERGAFDAAHQPKLDTLLPLVALGTVADVV
KLDANNRRLVAQGLKRIRAGALPAGIASLFKAAGRQAPAATTFDFGFALGPRINAAGRLA
DMRLGIECLLTDDPARADELAQMLDGINRERRQIESGMRDQAQLAADAMIDEDEEPPPAI
AIFDPEFHEGVVGIVASRIKDKLHRPTFVFAASQAPGKEHELKGSGRSIPGFHLRDALDL
VAKRHPGVLLRFGGHAMAAGCTIAEENFEAFEYGLQQVAREWLDAATLTRRLETDGPLAP
EYRRADLVDTLHKEVWGQGFAAPTFSEEVEVVSQRLVGDDKHLSLKLKHRGEPVDGIWFG
HTDALPARVTLAFRLDTNEWKGIRRVQFLIEAAEIRPQER
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgaaaatccaggtacgcgacgtgcccccgcgcagcctctgggcgctgcagcaggccggc
atccatcctttgctggcgcagttgtatgcggcgcgcggcgtccatgcggcggcagaactt
gacgacgggctggcccggctgctgccgccctcatcgctcaagggtgcgcgcgaagcggcc
atcctgctggccgatgcgatggccgcaggcaagcacatctgcgtggtcgccgactacgac
tgcgacggcgccaccgcctgcgccgtggcgctgcgcggcctgaagctgctgggcgccaca
aacgtcggctacctcgttcccgaccgggtggttgacggctacggcctgaccgcgccgatt
gccgagcgcgtcaaggcgaccggcgccgatgtgctggtcaccgtggacaacggcattgcc
agcatcgacggcgtggcgcgcgccaaggcgctgggcctgcaggtgctggtgaccgaccac
catttgcccgcgctgttcaacgaaaaaatcggcctgcccgacgccgacgtgatcgtcaac
ccgaatcagcccggctgcggctttgaaagcaagtccatggccggcgttggcgtgatgttt
tacgtgctgctggcgctgcgcgccgaattgcgcgagcgcggcgcgtttgacgcagcccat
cagcccaagctcgacacgctgctgccgctggtcgcactgggtacggtggccgatgtcgtc
aagctggacgccaacaaccgccgcctggtggcgcagggcctcaagcgcatccgggccggc
gccctgcccgccggcatcgccagcctgttcaaggccgccggccgccaggcgcccgccgcg
acgaccttcgatttcggtttcgcgctcggcccgcgcatcaatgccgccggccggctggcc
gacatgcggctgggcatcgaatgcctgctgaccgacgacccagcacgcgccgacgagctg
gcgcagatgctcgacggcatcaaccgcgaacgccgccagatcgagtccggcatgcgcgac
caggcgcaactggcggccgacgcgatgatcgacgaggacgaggaaccgccgccagcgatt
gcgatttttgaccccgaattccatgaaggcgtggtcggcatcgtcgcctcgcgcatcaaa
gacaagctgcaccggccgacctttgtgttcgccgccagccaggcgccgggcaaggagcat
gaactcaagggctcgggccgctcgattccgggttttcacctgcgcgatgcgctggacctg
gtcgccaagcgccatccgggcgtgctgctgcgctttggcggccatgcgatggcggccggc
tgcacgattgccgaggaaaatttcgaggccttcgagtacgggctgcagcaggtggcccgt
gaatggctggacgccgccaccctgacgcgccggctggaaaccgacggcccgctggcgccc
gaataccggcgcgccgacctggtcgatacgctgcacaaggaagtctggggccagggcttt
gccgcgcccaccttcagcgaagaggtcgaggtggtgtcgcagcggctggtcggtgacgac
aagcatttgtccctaaagctcaagcaccggggagagccggtggacggcatctggttcggt
cacaccgacgccctgccggcgcgcgtcacgctggcgttccggctcgataccaatgagtgg
aaaggcatccggcgcgtgcagtttctcatcgaagcggcggaaatccggccccaggagcga
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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