KEGG   Polynucleobacter necessarius: Pnec_0682
Entry
Pnec_0682         CDS       T00683                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pne  Polynucleobacter necessarius
Pathway
pne03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pne00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Pnec_0682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pne03019]
    Pnec_0682
   03016 Transfer RNA biogenesis [BR:pne03016]
    Pnec_0682
Enzymes [BR:pne01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Pnec_0682
Messenger RNA biogenesis [BR:pne03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Pnec_0682
Transfer RNA biogenesis [BR:pne03016]
 Prokaryotic type
  tRNA degradation factors
   Pnec_0682
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 OB_Dis3 CSD
Other DBs
NCBI-ProteinID: ACB43918
UniProt: B1XU91
Position
591419..593803
AA seq 794 aa
MRKAKDLVPREADRLGTVQGHRDGFGFVIPDDGGEDIFLSEREMSRIMHGDRVNVRILGT
DRCGRPEGQIVEVVLHANKVVIGRLLNENGVLIVAPEDKRIGHDILIPPKVQGNAKLGQV
VSVEIIDYPDSYRQAVGRVVEVLGEIDDPGMEIEIAVRKYGVPHEFSAAAMKEAAALPDA
VQQSDLEGRVDLRDVPLVTIDGADARDFDDAVYCEPVIYGKTKAWRLIVAIADVSHYVKP
GQPLDNEGLLRATSVYFPRRVIPMLPEKISNGLCSLNPGVDRLCMVCDSVVDNNGIVLVH
QFYPAVMHSAQRFTYDTVWEVLSNSKGPEATRFAQFCPLLMNLYSLYKILLAAREKRGAI
EFETTETQIISNELGKILRIEPRIRNDVHRLIEECMLTANVCAADFIDKNKHLSLYRVHG
EPSEEKLVTLRQVLRASGLSLGGGEKPKPRDFAKLIREIKDRPDANMLQSVVLRAMQQAM
YQPDNEGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKSILQKKPYVPVLPPKVPLNLTLPR
KGKGRENAVNAKKSQSDAKAGVAKGVKKPKGANAALSIWGQLGVHCSSNERRADEASRDV
EVWLKCYYMRDHLGQEYAGTVTGVANFGLFIQLENLFVEGMVHVTELGGDYFQYDEARQE
LRGERTGIRYRLGDRLHVLVSRVDLDARKIEFSLVNSVGAEPGGSSNRRQLLLATNTGRP
NKKAAPKKSRPDNKIPQKPSGINVNAAKSAGTLGANQSKSKATRKSGKSSKPGRVIGKPA
GSKPPVRNTKARRK
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgcgtaaagcaaaggacttggtgccacgcgaggctgatcgtttaggaacagttcagggg
catcgagatggatttgggtttgtcattcccgatgatggtggtgaagatatctttctatct
gaaagagagatgtctcgcatcatgcatggcgatagagttaatgtaagaattctaggaaca
gatcgctgcggtcgcccagagggtcaaattgttgaagtcgttctgcacgctaataaagta
gtgattggacgtcttctaaatgaaaacggtgttttgattgttgccccagaagataagcgt
attggccatgacattttgattccgcctaaagtgcaaggtaatgccaaattagggcaagta
gttagtgttgagattattgattacccagatagctatcgccaggctgttggtcgcgtggta
gaagtcttgggtgaaattgatgatcccggcatggaaatagaaatcgctgtgcgcaagtat
ggcgtaccgcatgagttttctgccgccgctatgaaagaggctgcggctttgccggatgcg
gttcagcaatccgatcttgaaggtcgcgtggatctgcgtgatgtgccattagttaccatt
gacggtgctgatgcgcgagactttgatgatgcggtctattgtgagccggtcatatacggc
aaaacgaaggcctggcgtttgattgtggctattgctgacgtatctcattacgttaagcct
ggtcagccattggataatgagggtctattacgcgctacttcagtgtattttccaagacgc
gtaatcccgatgctgccagagaaaatatctaatggcctttgttctttaaatcctggagta
gatcgtctgtgtatggtctgtgactctgtggttgataacaacgggatcgtgttagtacat
cagttttatccggcggtgatgcattcggctcaacgctttacttacgatactgtttgggag
gtcctttctaacagcaagggtccagaagctacgcgcttcgcgcagttttgccccttactg
atgaatctctattccctatacaagatcctattagcagctcgtgagaagcggggcgctatt
gagtttgaaacgacggagacccaaatcattagcaatgagctcggcaagatcttgcgcatt
gagccacgtatccgtaatgatgtccatcgtttgattgaagagtgcatgttgactgccaat
gtttgtgcggcagacttcattgataaaaacaagcaccttagcttgtatcgcgtacatggt
gagccgtcagaagagaagttagtaactttgcgtcaagttcttagagcgtcagggctttca
ttgggcggcggtgaaaaacctaagccacgtgactttgccaagttgattcgggaaattaaa
gatcgtcctgatgccaatatgctgcaatccgttgtgctgcgtgccatgcagcaggcgatg
tatcagccggataacgaaggccactttggtttagcttatccagcttattcacatttcaca
agcccgattcgtcgctaccctgatttactaacgcatcgggtaatcaagtcgattctccag
aaaaagccttacgtaccagtattgccgcctaaggtgccactcaatctcaccttgccgcgt
aaaggtaagggtcgtgagaatgcagtcaatgccaagaaatcccaaagtgatgcaaaagca
ggagtagccaaaggggttaaaaaacctaaaggcgcaaatgcagcattatcaatctggggt
caattgggcgttcactgctcatccaatgagcgtcgtgcggatgaggcctctcgagatgtt
gaagtttggctcaagtgctattacatgcgtgatcatttgggtcaagaatatgcaggcaca
gtgactggtgtagcaaactttggcttatttattcagttagagaatctctttgttgaaggt
atggtgcatgtcactgagcttggtggagattatttccagtatgacgaagcgcgccaagag
ttgcgtggagagcgcactggtattcgttatcgcttgggtgatcgcttgcatgtattggtg
agtcgtgttgacttggatgctcgcaagattgaattcagccttgtgaattctgtcggcgca
gaacctggaggctcatccaatcgacgtcagttgttattggcaaccaataccggaagacca
aataaaaaagccgcccctaaaaagagtcgccctgataataagattccacaaaaaccaagt
ggcattaacgttaatgcggctaaatctgcaggcactctaggcgcaaaccaatctaagagc
aaagcgactcgtaaaagcggcaagtcaagcaagcctggcagagttatcggtaaaccagcg
ggtagtaagcccccagttcgcaatacaaaagcgcgtcgtaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system