KEGG   Parastagonospora nodorum: SNOG_11456
Entry
SNOG_11456        CDS       T01161                                 
Name
(RefSeq) hypothetical protein
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
pno  Parastagonospora nodorum
Pathway
pno03020  RNA polymerase
pno03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SNOG_11456
  09124 Replication and repair
   03420 Nucleotide excision repair
    SNOG_11456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pno03021]
    SNOG_11456
   03400 DNA repair and recombination proteins [BR:pno03400]
    SNOG_11456
Enzymes [BR:pno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SNOG_11456
Transcription machinery [BR:pno03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     SNOG_11456
DNA repair and recombination proteins [BR:pno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SNOG_11456
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 RNA_pol_Rpb2_4 MELT_2
Other DBs
NCBI-GeneID: 5978606
NCBI-ProteinID: XP_001801698
UniProt: Q0U9V8
Position
Unknown
AA seq 1252 aa
MASEYVDDVEDYEDDEGGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKE
NGTVILEQNTPYDPDEDSDPIIKRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNL
TYSGAMLADISNRIMVAKETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVF
IGKLPVMLRSELCHLRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVF
RKKQGNVPWTAEIRSAVEKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQE
VPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGA
NQGTRDRRLKFARDIMQKDKTLAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG
PLVANLFRILFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQK
KAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEG
QACGLVKNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVH
SQAQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRN
QLVFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMIT
FSPEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASI
IPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYLKFR
ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLEQFE
KPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTLHTKR
DVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYR
QEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGQEGDATPFTEVTVDEI
SDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRHMVDDKIHARARGPLQILT
RQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDICGLMSPIASI
KKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAMNIATRMFTDRSGLSVRD
NT seq 3759 nt   +upstreamnt  +downstreamnt
atggcttccgaatacgttgacgacgtcgaggactacgaggatgacgagggtggagagatc
acttcggaagactgctgggccgtcatcagctctttctttgacacgaagggtctggtatct
cagcagctggactcatatgacgaatttacacgcaacacaatacaagacatagtgaaggaa
aacggcaccgtaatactcgagcagaacacgccctacgacccagacgaggatagcgacccc
atcatcaagcggcggtacgagatcaaatttgggcgcgtttacctcgcgcgacccacgcac
acagaaggcgatggcactaccgtggcgcttttcccgcacgaggcgcgtctgcgcaatctc
acctactcgggcgctatgctggcggatatctcgaatcgtataatggttgcgaaagagacg
caggtggtcgttgaaggtgaagacgaggatatggaagtcaccaacacagtgggtggtccg
acgcagatcaaatgggagcgcgaggatgtaccgatggacgaggagtcagcgcgggtcttt
ataggaaagctgcccgtcatgctgcgatcagagctttgccatctacgcaaccagtctgat
gaggccttgttcgccttcaacgagtgtccctacgatcagggcggctacttcgtcatcaac
ggcagtgagaaggtccttatcgcacaggagcgcagtgcggcgaacattgtgcaggtcttc
cggaagaagcagggcaacgttccctggacagctgagattcgaagcgccgtcgaaaagggc
actcgtctgatctcgtctttcaacatcaaatgggccgacacctcactgggcaatcccgga
cagggcaagcgagctcctggaccgttcgcatacgctatgctcccatatatcaagcaggaa
gtgcccatggccatcgtcttccgtgctctcggcatcgtttccgacgaagaaatcctcagc
cacatcgtatacgaccgcaccgacacacagatgctggagttactgaagcctagcatcgag
gagggtgcggtgatacaggacagggagactgcactcgacttcatcgccaagcgtggagcc
aaccagggtaccagggaccgacgtctcaagttcgcgcgggacatcatgcagaaggacaag
acactcgcaaagcctacttttttcggttacatgatccaccgactgttgcagtgtgttctc
gggcgccgagacgaagacgaccgagatcatttcggaaagaaacgactggatctggcagga
ccgctggtcgcaaacttgttccgtattctcttcctgaagttgactaaggacgtcttcaag
tatcttcagcgatgcgtcgagagcagcacggacttcaacgtgcaaatggctgtgaaggcc
agcatcatcacaaatggcctgaaatactctttggccacgggtaactggggtgaccagaag
aaggctgcatctgcgaaagcgggtgtatctcaagtgttgaaccgctacacatatgcatct
acattgtcccatttgcggaggacgaacacgccagtcggtcgtgacggtaagctggcgaag
cctcgtcagctacacaactcgcattggggtcttgtttgccctgctgaaaccccagaaggc
caggcctgtggtctggtcaagaacttgtccctcatgtgctacgtcagtgtcggtagtgat
gctaccccgatcatcgacttcatgtcacaaagaaacatgcaactccttgaggaatacgac
cagaaccaaaacccagaagctacgaaggtcttcgtaaacggtgtctgggttggtgtccat
tctcaagcgcaacagctcgtttctgtggttcaagagctgagaaggaacggaactctctcg
tacgaaatgagcttgattcgtgatatccgtgaccgggaattcaagatcttcactgacgct
gggcgtgtcatgcgacctctcttcgtagtagagaacaatcctaccaagcccaaccgcaac
caattggtcttcgacagagagatcagtaaccgccttgtaaaggagcagttggatagcgac
actcgcgccggctggagtgacgctgacatcgctgacaatacctatggatggaagggactc
atccaagacggtgtgatcgagtaccttgatgctgaggaagaggagactgctatgattacg
ttctcacctgaggatcttgacgagtggcgaggcatgaagatgggtctcccaacgagcgag
cgagccaatcttggcaaggagcgtcttcgacgtatcaagcccaagccggaccctcgcatc
cacgcctacacacattgcgagattcatcctgctatgattctgggtatatgcgccagtatc
attccgttccctgaccacaatcagtcgccccgtaacacataccagtctgccatgggtaag
caagccatgggtgttgccctgaccaactatgctctgcgtatggagacgatgatgaacgtc
ctttattatccgcaaaagcctctggccacaactcgctctatggagtacctcaagttccgt
gagctgcctgctggtcaaaacgccatcgtcgccatcgcatgttattctggttacaaccaa
gaagattccgtcatcatgaaccaaagcagtatcgaccgtggtcttttcaggagtctgttc
taccgtgcgtataccgagcaagagaagcgcattggtgtcaacgtgctggagcaattcgaa
aagccgactcgtgccgacactctaagactgaagggcggaacttacgacaagctcgacgac
gatggtgttgtcgcccccggagtgcgtgtttctggtgacgatatcatcatcggaaagacg
gcgccaatagcagctgatgcccaagagctgggccagaagactactctacataccaagcgc
gacgtgtctacgcctctgcgaagcacagagaacggtatcgtcgaccaagtcttgttcacc
accaacaccgaaggccttcgtttcgtcaaggtccgcacacgtacgaccaaggtacctcaa
attggcgacaagtttgcttctcgtcacggacagaagggtaccattggtatcacataccgg
caagaagatatgccttttacaagtgagggcttgactcctgatttggtcatcaaccctcat
gccattccgtctcgtatgacaattgcccatttggtcgagtgtcttctctccaaagttggt
gccattactggtcaagagggtgacgccacaccattcactgaggttaccgttgacgaaatt
tctgatctgctcgagcaagccgggtaccaaaagcgtgggtttgagatcatgtacaacggc
cacaccggcaagaagatgcgtgtccaagtcttcttgggaccaacgtactaccagcgtctg
cgacatatggtcgacgacaagatccacgcccgcgcccgtggcccactacaaatcctgact
cgccagcctgtcgaaggtcgtgctcgtgatggtggtctgcgtttcggagagatggagcgc
gattgtatgattgcgcacggtgccgctgctttcctcaaggagcgtcttttcacagtctcg
gatgcgtatacagtgcatgtatgcgacatctgcggactgatgagtcctattgcatccatc
aagaagggcatgtacgaatgcagaccctgccacaacaagacgcgtatctcgcagatccac
attccttatgccgccaagctcctcttccaggaactcctcgccatgaacattgcgacgcgc
atgttcacggatcgctctggcctcagcgtgcgcgactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (42)   

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