KEGG   Parastagonospora nodorum: SNOG_15623
Entry
SNOG_15623        CDS       T01161                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
pno  Parastagonospora nodorum
Pathway
pno03013  Nucleocytoplasmic transport
pno03015  mRNA surveillance pathway
pno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SNOG_15623
  09122 Translation
   03013 Nucleocytoplasmic transport
    SNOG_15623
   03015 mRNA surveillance pathway
    SNOG_15623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pno03019]
    SNOG_15623
   03041 Spliceosome [BR:pno03041]
    SNOG_15623
Messenger RNA biogenesis [BR:pno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SNOG_15623
Spliceosome [BR:pno03041]
 Complex C
  Other components
   EJC/TREX
    SNOG_15623
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SNOG_15623
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 5982697
NCBI-ProteinID: XP_001805767
UniProt: Q0TXZ2 A0A7U2HXD6
Position
Unknown
AA seq 438 aa
MSHEEDLIDYSDEEIQPTEVPANGDAAAAKGGLAAPDASGEKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GVASILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHII
VGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSA
TLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDEREKNRKLNDLLDNLEFNQ
VIIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAA
EIPEFPEDGISSASYMDN
NT seq 1317 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaagatctcatcgactactccgatgaggagatccagccaaccgaggtg
cccgccaacggcgacgcagcagctgcaaagggcggcctcgctgcgcccgacgcgtccggc
gagaagaagggcagctatgtcggcattcactccaccggtttccgcgacttcttgctgaag
gacgagctcgtgcgagccatcaccgactgcggattcgagcatccttccgaggtccagcaa
gttaccattccccaggctattctcggaaacgatgtcctctgccaggccaagtccggtctc
ggaaagactgctgtcttcgtccttgccaccctacagcaaatggacgagaagccagagccc
ggcgttgcctccatcctggttatgtgccatacccgtgagttggcttaccagatcaggaac
gagtacaaccgctttgccaagttcttgcccgatgtcaaggtcggcgtcttctacggcgga
accccagttgcgaaggacatcgagctcctcagcaacaaggacacccaccctcacatcatc
gtcggcaccccgggacgtatcaacgctctcgtccgtgacaggcaccttcgcctcgccaac
ttgaagcacttcgtcctcgatgagtgtgacaagatgctggaccagcctgacatgcgcaac
gacgtccaggcgatcttccgtgctacccccgcccacaagcaggtcatgatgttctcagcc
actctgtccaaggagatccgcgctgtctgcaagaagttcatgcagaaccccctggagatc
tacgtcgacgacgaaaagaagctgaccctgcacggtcttcagcaattctatgtcaagctt
gatgagcgcgagaagaacaggaagctcaacgacctcctcgataacctcgagttcaaccag
gtcatcatcttcgttcgctcaaccctgcgctgcaccgagctcgacaagctcctccgcgag
tgcaacttccctagcaccgcggtccactccggtatcggccaagaggagcgtatcaagcgc
tacaaggagttcaaggagttccagacccgtatctgtgtctcgactgatatcttcggtcgt
ggtatcgatgtcgagcgtatcaacgtcgctatcaactacgatatgcccgacaaggctgac
gcttacctccatcgtgtcggtcgtgctggtcgtttcggaaccaagggtctgagtatctca
ttcgtcagcagccaggacgatgaggctgtactcaaggccatcgaggagcgcttcgctgcc
gagatcccagagttccccgaggacggcatcagctctgccagctacatggacaactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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