KEGG T00343: Bpro

Polaromonas sp. JS666: Bpro_3003

Entry

Bpro_3003 CDS T00343

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

pol Polaromonas sp. JS666

Pathway

pol03410	Base excision repair
pol03420	Nucleotide excision repair
pol03430	Mismatch repair
pol03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:pol03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pol03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pol03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:pol03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3164060..3166708

AA seq 882 aa
MGSADLLKTYRARRDFKQTPEPATGGERSGKALRFVVQKHAARSLHYDFRLELQGTLKSW
AVPKGPSLDPAVKRMAVHVEDHPMAYAGFEGTIPPGQYGAGHVIVWDRGLWTPVGNPAAG
LKNGKLKFELHGEKLKGGWTLVRMHGHAGESHEPWLLIKEQDDHARPEQVFDVLQALPNS
VLSGKPLPGKAATGTQCAPRAARTRKAAPESHAGKHARTTAASARSGKSIPKGIPEGAVK
SRLPGTLAPELATLVNRVPADPQDWIYEIKFDGYRLLTRTEGDSVRCITRNGNDWTARLP
GLAKAVAQLDIRSAWLDGEIVVMNDQGVPSFGALQNAFDSASTADIRYYVFDLPFYDGLD
LRQVPLAQRREILRTALTRNPQDSIRFSEAFDQPPQDLIDSAQRLGLEGVIGKRAASPYV
SRRSPDWIKLKTRLRQEFVIGGYTEPKGSRTGLGALLLGVHDAQGRLRYAGNVGTGFNAE
TLRSLKERLSTLHSERSPFAALPTGVKGQWVKPQLLAEVAFGEWTHGGHIRHPVFQGLRT
DKPARNILRETPTSPVTPRKGSDMPQDAATPGPTSRKTRDKAPGKAPESVRITHPDRVID
KTTGFTKQAMVEHYAAVAPLMLPHLKGRPVALVRAPAGVGGELFFQKHAQATAIPGIKLL
DPALDPGHEPLLEIPSAAALLEAAQVNVVEFHTWNATSRAIRKPDRMTFDLDPGEKVGWP
EMQEAAQLVHSLLDELGLASFLKTSGGKGLHVVVPLRRSHDFDTVKDFSHAIVKHLAGVL
PQRFVAKSGPKNRVGRIFVDYLRNGFGATTVSAWSARARPGLGVSVPVAWDELASLTGGA
HWTATTIGGRLATGNQPWKDYGARANGLAEAMKKLGFKPPAH

NT seq 2649 nt +upstreamnt +downstreamnt
atgggttccgcggatttgctgaaaacctaccgcgccaggcgcgacttcaagcagacgccc
gagcccgccacgggaggcgagcgctccggcaaggcgttgaggtttgtggtccagaagcat
gcggcgcgcagcctgcactacgacttccggctggaactgcagggcacgctgaaaagctgg
gcggttcccaaggggccgagcctggatccggccgtcaaacgcatggccgtgcatgtcgaa
gaccacccgatggcctatgcaggctttgaaggcaccattccacccgggcagtacggtgcc
ggccacgtcattgtgtgggaccgcgggctctggacgccggtgggcaacccggccgcaggc
ctgaagaacggcaagctcaaatttgaactgcatggtgaaaagctcaagggaggctggacg
ctggtgcgcatgcacggccatgccggggaaagccatgaaccctggctgctgatcaaggag
caggacgaccacgcacgccccgagcaggtatttgatgtactccaggcgctgcccaacagc
gtgctttccggcaagcccttgcctggcaaggcagccaccggcacacagtgcgcccctcgc
gctgcgcgcaccagaaaagcagcgcctgaaagccacgccgggaagcacgccagaacaacg
gcggccagcgcacggtccggtaaaagcattcccaaaggcattcccgaaggcgcggtgaaa
tccaggctgcccggcacgctggccccggaactggccacgctggtcaaccgcgtgcctgcc
gacccgcaagactggatctacgaaatcaagtttgatggctaccggctgctcacccgcacc
gagggagactcggtgcgctgcatcacgcgcaacggcaacgactggaccgccaggctgcct
gggctggccaaagccgttgcacaactggatatacgctccgcctggctggacggcgaaatc
gtggtgatgaatgaccagggcgtgcccagcttcggcgcgctgcaaaacgcctttgacagc
gccagcacggccgacatccgctactacgtgttcgacctgccgttttacgatgggctggac
ctgcgccaggtgccgctggcgcagcggcgtgaaatcctgcgcacggccctgacgcgcaat
ccgcaggacagcatccgtttcagcgaggcgtttgaccagcccccgcaagacctgatcgac
tcggcccagcgcctgggcctggaaggcgtgatcggcaagcgcgcagcctcgccctacgtc
tcgcgccgctcgcccgactggatcaagctcaaaacccggctgcgccaggagtttgtgatt
ggcggctacaccgagcccaaaggctcccgcaccggcctgggagccctgctgctgggtgtg
catgatgcgcagggcaggctccggtacgccggcaacgtgggcacaggcttcaatgccgag
acactgcgcagcctcaaggagcggctgtcaacgctgcacagcgagcgcagcccgtttgcc
gcgctgccgacaggcgtcaaagggcaatgggtgaagccgcaactgctggccgaagtggcg
tttggcgaatggacccacggcggccacattcgacaccccgtgttccagggacttcgcacc
gacaaaccggccagaaacatcctccgtgagacgcccacatcaccagtcaccccccggaaa
ggctccgacatgccgcaagacgctgccacaccaggccccaccagccgcaaaacccgtgac
aaggcccctggcaaggctcctgagtccgtgcgcatcacgcatcccgaccgcgtgattgac
aagaccaccggcttcaccaagcaagccatggtggagcactacgccgccgtcgccccgctc
atgctgccgcacctcaaggggcgcccggttgccctggtccgcgcgccggcaggcgtcggg
ggtgagctgtttttccagaaacacgcgcaagccacggcgattcccggcatcaagctgctc
gacccggcgctggacccgggacatgagccgctgctcgagatcccttctgcagcggccctg
ctggaagccgcgcaagtcaatgtcgtggaattccacacctggaacgcgaccagccgcgcc
attcgcaagcctgaccgcatgaccttcgacctggaccccggcgaaaaggttggctggccg
gagatgcaggaggccgcgcagctggtgcactctcttctggatgagctgggactggccagt
tttctgaaaaccagcggaggcaagggcctgcacgtcgtggtgccgctgaggcgcagccac
gacttcgacacggtgaaggatttctcgcacgccattgtgaagcacttggcaggtgtcttg
ccgcaacgcttcgtggcgaagagcggccccaaaaaccgggtcggcaggatatttgtggac
tacctgcgcaacggtttcggcgccacgaccgtctcggcctggtcggcgcgcgcgcggcca
gggctgggggtctcggtaccggtggcgtgggatgaactggcttccctgaccggaggtgcg
cactggaccgcgacgacgataggcgggcggctggcgactggaaaccagccctggaaggac
tatggcgcccgcgccaatggcctggcggaggcgatgaaaaagctgggcttcaagccgccc
gcccattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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