KEGG   Pongo abelii (Sumatran orangutan): 100461480
Entry
100461480         CDS       T01416                                 
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
  KO
K08132  collagen type XII alpha
Organism
pon  Pongo abelii (Sumatran orangutan)
Pathway
pon04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:pon00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100461480 (COL12A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:pon00535]
    100461480 (COL12A1)
Proteoglycans [BR:pon00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   100461480 (COL12A1)
SSDB
Motif
Pfam: fn3 VWA VWA_2 Pur_ac_phosph_N Collagen Interfer-bind DUF4998 VWA_3 Copine Toxin_R_bind_N
Other DBs
NCBI-GeneID: 100461480
NCBI-ProteinID: XP_024103985
Ensembl: ENSPPYG00000016780
Position
6:complement(72547748..72669561)
AA seq 3063 aa
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAKPVDPIVGYRITVD
PTTDGPTKEFTLAASTTETLLSELVPETEYVVTITSYDEVEESVPVIGQLTIQTGSSTKP
VEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSP
VTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVF
SYHITYKEATGDDEVTVVEPASSTSVVLSNLKPETLYLVNVTAEYEDGFSIPLAGEETTE
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVAGGESREVTTPPNQRRRTLE
NLIPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHT
MIENLQPETKYRISVFATYSSGEGEPLTGDATTELSRDSKTLKVDEETENTMRVTWKPAP
GKVVNYRVVYRPHGGGRQMIAKVPPTVTSTVLKRLQPQTTYDITVLPIYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQVALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEMRLGPTVNDMQLTDLVPNTEYAVTVQAVLHDLTSEPVTVR
EVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTS
LKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGAS
DVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTVYEVSITAIYPDESESDDLIGS
ERTLPILTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQMTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTL
SVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEG
DGGRTSDTGRTLMRGLARNVQVYNPTPNSLDVRWDPAPGPVLQYRVVYSPVDGTRPSESI
VVPGSTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNS
LSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPME
AFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDRGTTLYLNVTDLKTYQIGWDTF
CVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPNLE
GPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFN
KVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGV
ADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPG
FKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRIQKNAFVNQPTADLHPNGLPPSYTII
LLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEV
KTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEVLGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEAKCPAFPNSCTCTQDSVGPPGPPGPAGGPGA
KGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLP
GRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDH
GRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQ
PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSPGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYP
GSG
NT seq 9192 nt   +upstreamnt  +downstreamnt
atgcggagtaggcttcccccagcgcttgccgccctgggcgcggccctgctcctgtcttcc
attgaggcagaagttgacccaccttcagacttgaattttaaaattatagatgaaaatact
gttcatatgtcatgggcaaaaccagttgatccaattgtgggttacagaataacggtggac
cctacaacggatgggcctactaaagaatttacccttgcagctagtaccactgaaacgtta
ttgtcagaacttgtacctgaaacagagtatgtggtgacaataacttcatatgatgaagta
gaagaaagtgtaccagttataggacaactaacaattcaaacaggtagttcaacaaagcca
gtggagaagaaacctggaaaaaccgagatacaaaaatgctctgtcagtgcctggactgat
ttggttttccttgtggatggctcttggagtgtgggaagaaataatttcaagtacatttta
gactttattgctgctcttgtgtctgcttttgacattggggaagagaagacaagagttgga
gttgttcaatacagctctgataccaggactgaatttaacttaaatcagtactaccaaagg
gatgaacttcttgctgcaataaaaaaaattccatataaaggtggcaacacaatgacaggg
gatgccattgattatttagttaaaaatactttcacggaatctgctggggcaagagttggc
tttcctaaagtggcaattattattacggatggaaaatcccaggatgaagtggaaattcca
gcaagagagcttcgtaatgttggagttgaagttttctccttgggcattaaagctgcagat
gcaaaagaactcaaacaaattgcctccacaccttcactgaaccatgttttcaatgtggcc
aactttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgtt
gatgaacaacttggtgaattggttagtggagaagaagttgttgagcctccttcaaatttg
attgccatggaagtctcttcaaaatatgttaagctaaattggaatccatctcctagtcca
gtgaccggctacaaagtcatcctcacaccaatgaccgcaggaagccgacagcacgctctg
agtgtggggcctcagacaaccacactcagtgttcgcgacctctcagcagacacagaatac
cagatcagtgtttccgccatgaagggaatgacatccagtgaacccatttcaataatggag
aagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggatataaaagctgat
attgtgtttttggttgatggctcctatagcattgggattgcaaactttgttaaagttaga
gcctttttggaagttcttgtaaaaagttttgaaatttcaccaaatagggtccagattagt
cttgtccaatacagccgggatcctcatactgagttcactttgaaaaaattcaccaaagtt
gaagatataattgaagcaataaacaccttcccttacagaggaggatctacgaatactggc
aaagcaatgacttatgtcagagaaaaaatatttgtgcctagcaagggatcaagaagcaat
gtgccaaaggtcatgattcttatcacggatgggaaatcatcagatgctttcagagatcct
gcgataaaactaaggaattcagatgttgaaatctttgcagttggtgtgaaggatgccgtt
cgctcagaattggaagctattgcctctcctcctgcagagacccatgtgttcacggtggaa
gattttgatgcttttcagaggatatcttttgaactcacacagtctatctgccttagaatt
gagcaagaattggcagctataaagaagaaagcttatgtccctccaaaggatcttagtttt
tcagaagtgacttcttatggtttcaaaaccaactggtctccagctggagaaaatgttttt
tcatatcacatcacctacaaagaagcgactggggatgatgaggtcactgtggtggagcca
gcatcgagcaccagtgttgttctcagcaacctgaagccagagaccctgtatttggtcaat
gtgactgcggagtatgaggatggcttcagcattcccttagctggagaagagaccaccgaa
gaagtaaaaggagcgcctcgaaacctaaaggtgacagatgagactacagatagttttaaa
attacttggactcaagctccagggagagttttaagatatcgaattatatatagaccagtt
gctggtggagagagcagagaagttaccaccccacccaatcagaggaggagaaccctggag
aacttgattccagacacaaaatatgaagtatctgtaattcctgaatatttctcaggacct
ggtactccattaactggaaatgcagccactgaagaagttagagggaatccaagagactta
agagtttctgaccctacgacgtctactatgaaattatcttggagtggggcaccaggaaaa
gtgaaacagtatctcgtcacatataccccagtggcagggggtgaaactcaagaggtcact
gtgaggggagatacaaccaatacggtgctgcagggattgaaggaagggacacaatacgcc
ttatctgtgacagccttgtatgcgtctggggctggagacgccctctttggtgaaggaaca
acacttgaagaacgtggttctcctcaagatttagttactaaagacatcactgacacatca
attggggcttattggacatctgctccaggaatggttcgcggttacagggtctcatggaaa
tcactttatgatgatgttgacactggagagaaaaatctgcctgaagatgcaattcatact
atgatagaaaatctgcagccagagaccaaatacagaatttcagtatttgccacttacagc
agtggagaaggagagcctttgactggagatgccacaactgaattatctcgagattccaaa
accctgaaagtagacgaagaaacagaaaacacaatgagagttacgtggaaaccagcacca
gggaaagtcgtcaactaccgtgttgtctatcgcccccatgggggaggcaggcaaatgatt
gctaaggtgccccccacagtcacttcaacagtgttaaagcgacttcagccacagaccaca
tatgacatcacagttcttcctatttacaagacgggagaaggaaagcttaggcaaggatca
ggaacaacagcttctcgatttaagtctcccagaaacctcaaaacatctgacccaaccatg
tcaagcttccgagtgacttgggagcctgcccctggggaagtgaagggttataaagtcaca
ttccaccctacgggggatgacagaagactgggggagttagtggttggaccctatgacaac
acagttgttttggaggaacttagggctggtaccacctataaagtaaatgtttttggaatg
tttgatggaggagaaagctcaccacttgttggacaagaaatgacaaccctttctgacaca
actgtaatgccaattttatcttctgggatggagtgtctcaccagagctgaggcagacatt
gtgttgctggtggatggatcatggagcatcggccgggcaaattttagaactgtgaggagt
ttcatttctcgtattgtggaagtctttgacattggccccaaaagagtacaagttgctctt
gctcagtatagtggggatcccagaacagagtggcagttaaatgcgcacagagacaagaag
agcttgttgcaagctgtggcaaacttaccatacaaaggaggcaatactctcacagggatg
gctttgaatttcattcgccaacagaacttcaggacccaagctggcatgagacctcgagct
cgaaaaattggtgtgctcattactgatggaaaatcacaagatgatgttgaagcaccttca
aagaaactcaaggatgagggagtggagctgtttgctattggtattaaaaatgctgatgaa
gtcgaattaaagatgattgcaactgatcctgatgatacccatgcatacaatgtggcagat
tttgagtcactctccaggatagtggatgatctcaccattaatttgtgtaacagtgtcaaa
ggtccaggtgatttggaagcaccttctaacttagttatttctgagcgaacccatcgttct
tttagagtgagctggacaccaccttctgacagtgtggatcgatataaggtggaatactat
ccagtttctggagggaaacgtcaagaattttatgtgagtcgaatggaaactagcacagtg
ctgaaagatctgaagcctgaaactgagtatgttgtcaatgtgtattctgtggtagaagat
gaatatagtgagcctctgaaggggacagaaaaaaccttgccagtgcctgtagtcagcctg
aatatttatgacgttggccctaccaccatgcatgtgcagtggcagcctgtgggaggagct
actggctacatcttgtcatacaaacctgttaaggacacagagccaacaagacccaaagag
atgcgtttggggccaacagtgaacgacatgcagctgactgaccttgttcccaacacggag
tatgcagtcacagtccaggctgtcctgcacgacctcactagtgaacccgtcactgttcgg
gaagtcaccttgcctttacccagacctcaggatctgaaactcagagatgtgactcacagc
actatgaatgtcttttgggaacctgtgcctggaaaagtgcgtaaatatattgttcgatac
aaaacaccagaagaggatgtcaaagaggtagaggtggacagatcagagaccagcacttcc
ctcaaagacctcttctcacagaccttgtacacagtcagtgtttctgcagtacatgacgag
ggggagtctcctccagtgactgctcaagaaactacccgaccggtgccagccccaacaaac
ctaaagattactgaagtaacatcagagggtttcagagggacctgggatcatggagcttca
gatgtgtctctctacagaataacctgggcaccttttggaagctcagataagatggagacc
atcttaaatggagatgaaaacactttggtgttcgaaaacctgaaccccaacaccgtctat
gaagtttccattactgccatctatcctgatgagtcagaaagtgatgacctgattggcagt
gagcgcacactgcctatcttaacaacacaagctcccaaaagtggcccacgaaatcttcaa
gtgtacaatgcaacatctaacagcttgactgttaagtgggatcctgctagtggtcgtgtg
cagaaatataggatcacttatcagccttccacaggggaaggcaatgagcaaatgaccaca
ataggaggacggcagaacagtgtggtcctgcagaaactgaagccagacactccttacact
atcaccgtatcctctctgtatcctgatggtgaaggaggtcggatgacgggaagaggcaag
accaaacctctaaacactgtaaggaacctgagagtgtatgacccttctaccagcaccttg
agtgtccgctgggaccatgcagagggaaatcctcgtcagtacaagctcttctatgcacca
gcagcaggtggtccagaggaactggtaccaatccccgggaataccaattatgccattctt
aggaatctccagccggatacctcgtacactgtgacagtagttcccgtttatactgaaggt
gatgggggacgcacatcagatactggaaggacattgatgagaggactggcaagaaatgtc
caagtatacaatcctacacctaacagcctcgatgttcgctgggaccctgcaccaggacct
gtgctgcaatatcgcgttgtgtattctcctgtggatggcacaagaccctcagaatctata
gtggtgccaggaagcacgcgcatggtgcatctggagcggctgattccggacacactctat
tccgtgaaccttgtggctctgtactcggatggagagggaaatcccagccctgcccagggc
cgaacgctaccacggagtggaccaaggaacctgagagtctttggtgaaacaaccaatagc
ctctcggtagcctgggatcatgctgatgggccagttcagcagtacaggatcatctattct
cctactgttggtgatccaattgatgaatataccacagtcccaggcagaagaaacaatgta
atactgcagcccctgcaacctgacactccatataaaattactgttattgctgtttatgaa
gacggagatggtggccatctaacaggaaatggaagaactgtgggactccttcctcctcag
aacatacacatctctgacgaatggtatacaagattcagggtgtcctgggatccttcaccc
tctccagttcttggatataaaatagtatataagccagtgggttccaatgagcccatggaa
gcctttgttggagaaatgacatcatataccttacacaatctcaatcccagcaccacctac
gatgtgaatgtttatgctcaatatgattctggactcagtgtccccttgacagatcgaggc
actacattatatttaaatgtaacagatctgaaaacttaccagattgggtgggatacattc
tgtgtcaaatggtcacctcaccgggcagccacctcctacaggctaaaactaagccctgca
gatggaacaaggggacaagaaattacagtgcgtggatcagaaaccagtcactgcttcact
ggcctttcaccagacactgattatggcgtcactgtttttgtgcagacaccaaatctcgag
ggaccaggagtctctgttaaagaacataccactgtgaaaccaacagaagcccctacagag
ccacccacacctcctccccctcccaccattccaccagcccgggatgtatgcaaaggggcc
aaggcagatattgtgttcttgactgatgcctcttggagcattggggatgataattttaac
aaagttgtaaaattcatcttcaataccgtgggaggctttgatgaaatcagtcctgccggg
attcaggtttcatttgtgcaatacagtgatgaggtcaagtctgagttcaagctgaatacg
tacaatgacaaggccctagcccttggggccctccagaatattaggtacagaggaggaaac
acaagaacaggcaaggccctcacgtttatcaaggagaaagtcttgacttgggagagtggc
atgaggaagaatgtccctaaggtgttggttgtggtcacagatggtcggtcccaggatgag
gtcaagaaggcggctttggtcatccagcagtcagggttcagtgtctttgtagttggtgtg
gctgatgtcgactacaatgagcttgccaacattgccagcaaaccaagtgaacggcacgtg
ttcattgtggacgactttgaatcttttgagaagatcgaagacaatcttattacatttgtt
tgtgaaactgccacttcaagttgtcctctcatttatttggatggctacacctcaccaggg
tttaagatgcttgaagcatacaacctgacagaaaagaattttgcttctgtacaaggagta
tctttggagtcagggtctttccccagctactcagcttacaggattcagaagaatgcgttt
gtgaatcagcctacagcagacctacacccaaatggactccctccttcatacacgattata
ttattattcagacttctcccagaaactcccagtgacccttttgcaatttggcaaatcaca
gacagagactacaaaccacaagttggagtgattgcagatccttctagcaagacgttatca
ttctttaacaaggatacaagaggcgaggtgcaaactgttacatttgacacagaagaagta
aagacattattttatggaagttttcataaggttcatattgtagtgacctcaaaaagtgtt
aagatttacattgactgctatgaaattatagaaaaagacatcaaggaagctggaaatata
acaactgatggttatgaagttcttggaaaactccttaaaggggaaaggaaatcagccgca
ttccaaatccagagttttgacattgtctgcagtccagtgtggaccagtagagacagatgc
tgtgatattccctctaggagagatgaggcaaaatgccctgcttttccaaattcttgcaca
tgtacacaggacagcgttggacctccaggacctccaggccctgcaggagggcctggtgct
aaaggtcccagaggtgaaagaggtatcagtggggcaattgggccccctggtcctcgtgga
gacataggtcctccaggcccccagggtcctccaggccctcagggacccaatggactctct
attccaggagagcaaggtcgccaagggatgaaaggtgatgctggagagccagggcttcca
ggccgaacaggaaccccaggattacctggcccaccaggaccaatgggacctccgggagac
agaggcttcactggaaaagacggtgcaatgggacccaggggcccaccagggccgccggga
agcccaggctccccgggagtcacaggaccaagtgggaagccaggaaaacctggagatcat
ggcagaccaggtccatctgggttgaaaggagaaaaaggtgataggggagacattgcttcc
cagaacatgatgcgagcagttgcaagacaagtctgtgaacaattgataagtggtcagatg
aacagattcaatcagatgctgaatcagattccaaatgattaccagtccagtcgcaaccag
ccaggcccgccgggtccaccgggacctcctggcagcgcaggagccagaggagaacctgga
cccggggggcggccaggcttcccgggcacaccagggatgcagggaccccctggggaacga
ggtttgccaggagagaaaggtgaaaggggtactggatctccaggacctcggggactgcct
ggccccccaggtccacaaggagaatccagaacaggtccaccagggtccacaggttcaaga
ggtccccctggcccccctggccgtcctggaaactcaggtatccgaggacccccaggtcct
cctggatactgtgattcgtctcagtgcgccagcatcccatacaacgggcaaggctatcca
ggttccggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system