KEGG   Populus trichocarpa (black cottonwood): 18101568
Entry
18101568          CDS       T01077                                 
Name
(RefSeq) probable RNA helicase SDE3
  KO
K18422  helicase MOV-10 [EC:5.6.2.5]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18101568
   03036 Chromosome and associated proteins [BR:pop03036]
    18101568
Enzymes [BR:pop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     18101568
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     18101568
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     18101568
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 AAA_19 ResIII UvrD-helicase AAA_22 Mov-10_helical PhoH ATPase_2 Helicase_RecD DEAD AAA AAA_16 SLFN-g3_helicase AAA_7 SNF2-rel_dom MOV-10_Ig-like Mg_chelatase
Other DBs
NCBI-GeneID: 18101568
NCBI-ProteinID: XP_006379846
Position
8:complement(10616916..10621712)
AA seq 894 aa
MGTIDDKWGDECSVIGDKGEIEYIDYQNDKSVCSYDPSEEGPIVISAPFPFEEGKPRSVF
VGETAIDSITIKNTTAEAVDLWTKIYASTPEDSFKLSLMKPPSANDVKCQEGFMDFSVME
DRMLQPGESLTIWLSCKPKELGLYTTVVHFDVGNDRIERVAFLLADDNISQSLASKKPFS
RGQRKKKFSTDTFISAGSRPARAPGRAYKNRLPRYDIPKDIRALIERKQIPDVIMGGLTI
DNYASYFKTLLIMEEIQLEEDMRSHDMECVTMRRKGNYLSLVVPGLAERRPSLVQGDDIF
VKLADADDTTTPYQGYIYRVEADEVYLKFYQEFHSCHNDGHLYNVHFKYNRVSMRRLYQA
IDAAKDLETEMLFPSETSGSRLIETSTLVPISCSLNEEQICSVEMILGCKGGPPYVIYGP
PGTGKTMTIIEAILQLYQNRKHARILVCAPSNSAADHLLEKLLSEEAVHIQEKEIFRLNA
TSRPFDDIKPDLIRFCLFDEHIFTCPPLGALTRYRIIISTYMSASLLNAEGVKRGQFSHI
FLDEAGQASEPESMISVSNFCNRDTVVVLAGDPMQLGPVIFSRDAESYGLGKSYLERLFE
CESYDSGDENYVTKLIRNYRCHPEILHLPSTLFYEGELIACKESNDDSTSLMTLTNLLPG
KNFPVLFFGIQGCDEREANNPSWFNRIEASKVVEIVKKLATRGNLSDSDIGVITPYRQQV
LKLKKALDNIDMPDIKVGSVEQFQGQERKVIIVSTVRSTIKHNDFDRVHCLGFLSNPRRF
NVAITRAISLLIITGNPHIISKDQYWNKLLWHCVDNDSYQGCALPEKRLECVDNYPTYED
RVDYDGGPVTNEADWCDGWQPSSSGEVGWDHPGSSQAQIPEPVTDEAEWSDGWQ
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgggcacaattgatgataagtggggtgacgagtgctctgtcattggagacaagggagaa
attgagtatattgattatcaaaatgacaaatctgtgtgtagttatgatcccagtgaagag
ggtcctattgtcatttctgccccatttccttttgaagaggggaagccccgatcagtgttt
gttggggaaactgctattgattcaattactattaagaacaccaccgctgaagctgttgat
ttatggaccaaaatttatgcctcaactcctgaggattcttttaagctttcattgatgaaa
cctccatcagctaatgatgttaagtgccaagaaggcttcatggatttttcagtaatggag
gatcgaatgcttcagcctggcgagtcgttaaccatttggttatcctgcaaaccaaaggaa
cttggcttgtacactactgtggtgcattttgatgttggcaatgataggatagaacgagtg
gcctttttgttggctgatgataatatatctcagtctttggcttccaaaaagcctttctca
agaggccaaaggaagaaaaaattctccacagatacctttatttctgcgggatcacgtcca
gcaagggcaccaggtcgagcgtacaaaaacaggcttcctcgttatgatattcctaaagat
attagagcattgattgagagaaagcagatccctgatgttatcatgggaggtctaacgata
gacaattatgcttcctacttcaaaacactgttgatcatggaagaaatacaacttgaggaa
gacatgaggagtcatgacatggagtgtgttacgatgaggaggaaggggaattatctctcc
cttgtggtcccagggcttgcggaacggaggccctcccttgttcagggggatgatattttt
gtaaagcttgcagatgcagatgacacaacaactccatatcagggctatatttaccgggtc
gaggctgatgaagtgtacttgaaattttaccaagaatttcactcgtgccataatgatgga
catctttacaatgtgcacttcaaatataatcgagtcagtatgagaagactgtatcaggcc
attgatgctgcaaaggatttagagacagagatgctatttccatcggagacctctggaagt
aggctcattgaaacttctactctggtgcctatatcttgtagtcttaacgaggagcagatc
tgttcagtggagatgatccttggctgcaaaggaggcccaccttacgtgatttatgggcct
ccaggtacaggcaaaaccatgacaattatagaagcaattctccagctttatcaaaacaga
aagcatgctcggattcttgtctgtgcaccttcaaatagcgcagcagatcacctgttagag
aagcttctcagtgaggaggctgttcacattcaagagaaagaaatattcaggctcaatgca
acatcccgtccattcgacgacatcaagcccgatcttattcgtttttgtttatttgatgag
catatcttcacgtgtcctccactcggtgctcttactcgttatagaatcatcatatcaact
tatatgagtgcctctcttctcaatgctgagggcgtcaagcgaggacagttctctcatatt
ttcttggatgaggctggccaagcttcagaacctgaaagcatgatttctgtatcgaacttc
tgcaacagggatacagttgttgttcttgctggagaccccatgcaattgggcccagtaata
ttctccagagacgcggagagttatggactggggaaatcgtacttggagaggctctttgag
tgtgaatcttatgacagtggagatgaaaattatgtgacaaaactcataagaaactacaga
tgtcacccagagattctgcatcttccttcaactttgttctatgagggagaattgatagcc
tgcaaagagtccaatgatgattcaacttccttgatgactttgacaaaccttcttccagga
aagaactttcctgttctcttctttggcatccagggctgtgatgagagggaggcaaataac
ccatcgtggtttaatcgaatcgaagcaagcaaggtagtggagattgtaaagaaactggct
actaggggtaacctgagcgacagtgacattggggtcattacaccttataggcagcaagta
ctcaaactaaagaaggcactggataacatagacatgcctgacattaaagttgggagtgta
gaacaatttcaaggacaagaaaggaaggttatcattgtatctactgtccgatcaacaatc
aaacacaatgattttgacagggtccactgtttgggattcttaagcaacccgagaaggttt
aatgtagccattactcgtgctatatctctgcttattattaccgggaacccacacataatt
agtaaggaccaatactggaataaacttctatggcactgtgtagataatgactcctatcag
ggttgtgctctcccagaaaaaagactggagtgtgttgacaactatccaacatatgaggat
cgtgtcgactatgatggagggcctgtgacaaatgaagctgattggtgtgatggttggcaa
ccttcatcctctggagaagtaggatgggatcatccagggtcatctcaagcacaaattcca
gaacccgtgacagatgaagctgaatggtctgatggttggcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (31)   

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