KEGG   Populus trichocarpa (black cottonwood): 18108397
Entry
18108397          CDS       T01077                                 
Name
(RefSeq) exopolygalacturonase
  KO
K01213  galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop00040  Pentose and glucuronate interconversions
pop01100  Metabolic pathways
Module
pop_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    18108397
Enzymes [BR:pop01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.67  galacturonan 1,4-alpha-galacturonidase
     18108397
SSDB
Motif
Pfam: Glyco_hydro_28 Pectate_lyase_3 Beta_helix
Other DBs
NCBI-GeneID: 18108397
NCBI-ProteinID: XP_006371367
Position
19:complement(10709709..10711696)
AA seq 393 aa
MGLKVVSSAIISFSLFLLLASTAKAQSKGVFDVTKYGSDKDITEALTNAWKDACASTNPS
KVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPNQFSGGHWVNFGHVDKFTLSGS
GTFDGQGKAAWSKSTCQKDKDCDSLPMNLRFDFITNALVRDITTRDSKNFHVNVLGCKNL
TFQHFTVSAPGESVNTDGIHVGQSTGIYIIDSKIGTGDDCISVGDGTEELHITGVTCGPG
HGISVGSLGKYPNEKPVSGIFVKNCTLSDTTNGVRIKSWPALYGGVASNMHFEDIVMNNV
QNPVIIDQVYCPWNQCSLKAPSKVKISGVSFKNIRGTSATPVVVQIACSSGFPCEKVELA
DIKLAYSGPDGPSKSQCSNVKPIISGIMSAPGC
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgggcctgaaagttgtctcctcagcaataatatcattctcactgtttttattgttagca
tcaactgctaaagcccaatcaaaaggtgtcttcgatgtgactaaatatggttccgataaa
gatatcacagaggctttaaccaatgcttggaaagatgcttgtgcttcaacaaaccccagc
aaagttcttattccaagtgggacatactcgttacggaaattgactctagcaggtccttgc
aaggctgcgattgagctccaagttgatggcatgttgaaggcaccggttgacccaaatcag
ttctcaggagggcattgggttaatttcggacacgttgataaatttacattgtcgggaagc
ggcacttttgatgggcagggaaaggctgcgtggagcaaaagtacatgtcagaaagataaa
gattgtgacagcctcccaatgaatttaaggttcgatttcatcaccaatgcattagtccga
gatataactactcgagatagcaagaactttcatgttaacgtcttggggtgcaaaaacctc
accttccagcattttaccgtgagtgcacctggtgagagtgtaaacaccgatggaatccat
gtcggccaatctactgggatctacattatcgattcaaaaattggcacaggcgatgattgt
atctccgtgggagatggcaccgaagaactacatatcacaggagtaacatgtggacctggc
catggcatcagtgttggaagtttagggaaataccccaatgagaaacctgtttctggaata
tttgtcaagaattgcaccctctcagatactacaaatggcgttagaataaaatcttggcca
gctttatacggtggtgtcgcatctaacatgcattttgaggatattgtcatgaacaatgtc
caaaaccctgtcatcatagatcaagtgtattgcccatggaaccaatgcagtctaaaggct
ccatcaaaagtgaagatcagtggtgttagttttaagaatataaggggaacttccgcaact
ccggttgttgtgcagattgcttgcagcagtggcttcccatgtgagaaggtggagcttgct
gacattaaacttgcatatagcggaccagacggcccttcaaaatcccaatgttctaacgtt
aagcccataatttctgggataatgagcgcacccggatgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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