KEGG   Populus trichocarpa (black cottonwood): 7456770
Entry
7456770           CDS       T01077                                 
Name
(RefSeq) LOW QUALITY PROTEIN: putative CCR4-associated factor 1 homolog 8
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7456770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7456770
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7456770
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     7456770
SSDB
Motif
Pfam: CAF1 PGM1_C
Other DBs
NCBI-GeneID: 7456770
NCBI-ProteinID: XP_052308470
Position
4:3936116..3936822
AA seq 216 aa
MSRLDRALFKYKVMSIDTEFPSSIRDTPRDGSETKRYKDLKFNVDXSQMIQLDITXSDER
DTSFGAWEFNFYFDLAEDLCVFESVELLKKNGLDYDKHAREGIYMSGFTKIFTAVLAKHR
DLFWATSLGLYDLAYIPGLITHCSIARFTSLLGTVFDRDVDVKYMTRFCEGLCGGELGLS
KLANILRIEREGGAHQAGSDSLLTILAFAKVDKVTR
NT seq 651 nt   +upstreamnt  +downstreamnt
atgtcacgactggacagggctcttttcaagtacaaagtgatgtctattgacaccgaattt
cctagctctatacgcgatacaccgagagatgggtctgagacaaagagatacaaagacttg
aagttcaacgttgatngttctcaaatgatccaattggatatcacatagtctgatgagagg
gacactagttttggggcatgggaattcaacttctatttcgatcttgctgaggatttgtgt
gtttttgagtccgtggaactcttaaaaaagaatggtttggactatgacaaacatgcaagg
gaaggtatttacatgtctgggtttaccaagattttcacagctgttcttgcaaaacacagg
gatttgttctgggctacttctcttggcctgtatgatctagcctatataccggggttgatc
acccattgctccattgccagattcacttccctccttggcactgtattcgacagagatgtg
gatgttaagtacatgaccagattttgtgaagggctctgtggtggtgaattgggtttgtcc
aaattggctaacatattgaggattgagagagagggtggagcacaccaagcaggatcagat
agtttattgaccatcctagctttcgccaaagtagacaaagttacaaggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system