KEGG   Populus trichocarpa (black cottonwood): 7458946
Entry
7458946           CDS       T01077                                 
Name
(RefSeq) H/ACA ribonucleoprotein complex subunit 4
  KO
K11131  H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    7458946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pop03009]
    7458946
   03032 DNA replication proteins [BR:pop03032]
    7458946
Ribosome biogenesis [BR:pop03009]
 Eukaryotic type
  Sno RNPs
   Box H/ACA snoRNPs
    7458946
 Prokaryotic type
    7458946
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    Dyskerin complex
     7458946
SSDB
Motif
Pfam: DKCLD TruB_C_2 PUA TruB_N UPF0113
Other DBs
NCBI-GeneID: 7458946
NCBI-ProteinID: XP_024443529
Position
16:complement(2594340..2597206)
AA seq 602 aa
MSEVELSRSEKKKHKKKTQETETETNPTDTVKDFMIKPQNFTPTIDTSQWPILLKNYDRL
NVRTGHYTPLPCGHSPLKRPLAEYIRYGVMNLDKPANPSSHEVVAWIKRILRVEKTGHSG
TLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHDKIADVTKVARALETLTGAVFQ
RPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGGH
MQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVILTSYKRLVVK
DSAVNAICYGAKLMIPGLLRFENDIEAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGV
VAKIKRVVMDRDTYPRKWGLGPKASIKKKLISEGKLDKHGKPNDNTPHEWARNLVLPAGG
DSMVAGLAAAAEPVVKEIGEDGEGRKRKLDESSDSPAAHVAKKAKTELVKDEESVKVKKV
KEELVEGSDDEKKDKKKKKKKSKEDGEAGKEEKVELKKLKEEPVVGSEDEKKEKKKKKKK
SKEDAEVENLVEKETEKSEKKKKKKKDKEAEEAATIENGKADGEADKSEKKKKKKKDKDG
ED
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgtctgaagtcgagctttctcgttctgagaagaaaaaacacaagaaaaaaacccaagaa
actgaaacagagacgaaccctacagacacagtcaaagatttcatgatcaaacctcagaac
ttcaccccaacaatagacacttcacagtggccaattcttttgaaaaactacgacagactt
aatgtgcgaactggacactacactccacttccatgtggtcactcacctctcaagcgtcca
cttgctgaatacatcaggtatggtgttatgaatcttgataaaccagcaaacccatcatca
catgaagttgttgcttggattaagaggattttacgtgtcgaaaaaactggtcatagtggt
actttagaccctaaagttactggtaatttaattgtttgcattgatagagctactagactt
gttaaatctcaacaaggtgctgggaaagagtatgtttgtattgctagattgcatgataag
attgctgatgttacgaaagtagccagagcattagagacgcttactggagcggtttttcag
aggccgcccttgatttcggctgttaaaagacagcttagaattaggacaatttatgagagt
aagttgttagagtatgatgcagataagcatttggttgttttttggatttcgtgtgaggcg
gggacatatgttaggacaatgtgtgtgcatttggggttgattcttggggtaggtgggcat
atgcaagaattgaggagggtgaggtcagggattttaggggagaaagataatatggttact
atgcatgatgtcatggatgctcaatgggtttatgataattatcgtgatgagagttatttg
aggagggttattatgccccttgaagtgattttgactagttataagaggctggttgtgaag
gattctgctgtgaatgcaatttgttatggtgctaagttgatgattccagggctgttgagg
tttgagaatgatattgaggctggtgaggaagttgtgttgatgactactaagggtgaggct
attgctctgggaattgctgagatgacaactgctgttatggctacttgcgatcatggtgtt
gtggcaaagattaagagggttgtgatggatagggatacttatccgaggaaatggggattg
gggccgaaggcatcaatcaagaagaagttgatttctgaggggaagttggataaacatggg
aaaccaaatgataatactcctcatgaatgggcgagaaatttggttttgcctgctggtggt
gattccatggttgctggccttgctgctgctgctgaaccagttgtgaaggagattggtgaa
gatggtgaggggcgcaagcgcaaattggatgaaagctctgatagccctgctgctcatgtt
gcaaagaaggctaaaactgaattagttaaagatgaagagagtgtcaaggttaagaaggtg
aaggaagagcttgtggagggaagtgatgatgagaaaaaagacaaaaagaagaagaaaaag
aagagtaaagaggacggtgaggctggaaaggaagagaaggttgagttgaagaagctaaag
gaagagcctgttgtgggaagtgaagatgagaagaaagagaaaaagaagaagaaaaagaag
agtaaagaggatgctgaagtggaaaatttagtagaaaaggagactgagaagtctgagaag
aagaaaaagaagaagaaagacaaagaggctgaagaggccgcaaccattgagaatggcaaa
gctgatggagaggctgataaaagtgagaagaagaaaaagaagaagaaggacaaagatgga
gaagattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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