KEGG   Populus trichocarpa (black cottonwood): 7465260
Entry
7465260           CDS       T01077                                 
Name
(RefSeq) probable small nuclear ribonucleoprotein G
  KO
K11099  small nuclear ribonucleoprotein G
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7465260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7465260
   03041 Spliceosome [BR:pop03041]
    7465260
   03032 DNA replication proteins [BR:pop03032]
    7465260
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     7465260
Spliceosome [BR:pop03041]
 Complex A
  U1 snRNP components
   Sm proteins
    7465260
  U2 snRNP components
    7465260
 Complex B
  U1 snRNP components
    7465260
  U4/U6.U5 tri-snRNP components
    7465260
 Complex C
  U2 snRNP components
    7465260
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     7465260
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 7465260
NCBI-ProteinID: XP_024443209
Position
16:5907932..5909771
AA seq 113 aa
MQCPFNRALVLLLSIATNKKKKKKESIKVFVSVMSRSGQPPDLKKYMDKKLQIKLNANRM
VVGTLRGFDQFMNLVVDNTVDVNGDEKTDIGMVVIRGNSVVTVEALEPVTRTQ
NT seq 342 nt   +upstreamnt  +downstreamnt
atgcagtgccccttcaatcgagcgctcgttctcctgctttctatcgcgaccaacaaaaaa
aaaaaaaaaaaagagtccatcaaagtcttcgtttcagtcatgagcagatcggggcagcca
ccagatctcaagaagtacatggataagaagcttcaaatcaagctgaatgcaaataggatg
gtggtcggaacactccgtgggtttgaccagttcatgaatttggtggttgacaacactgtg
gacgtgaatggtgatgagaaaactgacataggcatggtggtgatcagaggcaatagtgtt
gtcactgttgaagcgttggaacctgtgaccagaacgcagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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