KEGG   Populus trichocarpa (black cottonwood): 7468676
Entry
7468676           CDS       T01077                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X3
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    7468676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    7468676
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    7468676
  Chromatin remodeling factors
   NuRD complex
    7468676
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo HDA2-3 ResIII PHD CHDCT2 Myb_DNA-binding PHD_4 SLIDE C1_1 C1_2
Other DBs
NCBI-GeneID: 7468676
NCBI-ProteinID: XP_002309665
UniProt: B9HAU9
Position
6:complement(25828736..25845849)
AA seq 1471 aa
MSSLVERLRVRSERRPVYNLDESDDDDYVSGKAKNPQEKIERFVRDDAKEDSCQACGESE
NLLNCETCTYAYHSKCLLPPLKAPFPSNWRCPECVSPLNDIDKLLDCEMRPTVADDSDAS
KLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLKTKVNNFNRQMASNNNSE
DEFVAIRPEWTTVDRILACRGDEDEKEYLVKYKELPYDECYWEFESDVSAFQPEIEKFNK
IQSRSHKPSKQKSSLQDATDSKKKSKEFQQCDHSPEFLSGGSLHPYQLEGLNFLRFSWSK
QTHVILADEMGLGKTIQSIAFLASLREEGISPYLVVAPLSTLRNWEREFATWAPQMNVVM
YVGSAQARAVIREYEFYYPKNHKKIKKKKSGQVVTESKQDRIKFDVLLTSYEMINLDSTS
LKPIKWECMIVDEGHRLKNKDSKLFLSLKQYCSNHRVLLTGTPLQNNLDELFMLMHFLDA
GKFASLEEFQEEFKDINQEEQILRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSK
QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFRQL
LETSGKLQLLDKLMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWMYERIDGKVGGAER
QVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ
TNKVLIYRLITRGTIEERMMQLTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFA
DENDEAGKSRQIHYDDAAIDRLLDREQVGDEETSLDDEEEDGFLKAFKVANFEYIDEAEA
AAEEEAQKAAMETRSTINNSERTEKTNFWEELLKDSYEVHKVEEFNALGKGKRSRKQMVS
VEDDDLAGLEDVSSDGEDDNYEAELTDGETTSSGVVQTVRRPYKKKARVDNTEPIPLMEG
EGRSFRVLGFKQNQRAAFVQILMRFGVGDYDWKEFASRLKQKTYEEVENYGRLFLTHIAE
DLTDSPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKARFASENPGSALFTDDIILRYPGLK
SGKFWKQEHDSLLLHAVLKHGYGRWQAIVDDKDLKVQEIICKELNLPCIRLPVLGQGVAQ
AQNGSTSNIANAEAPSTQAQANVAGNDVAADVAQGTIDAANPALSYRDSSILFHFRDMQR
RQVEFIKKRVLLLERGLNAEYQKIYFGGDIKPNEITSEEADGETKAADSSSLGSIEINAQ
MIDQLPQMEPIGSEEISAAACDDNPDRLALAEHYNKMCTVLEQNVHETIQISLTNHPASL
KLRQGLQPLEMIFEQMNQILSPLQQKSTSEQGTLGPNKHVQAESQSNQAKLHSPSDQQKE
NNDNAAAVEDVEMKEATTEPKLEETIASSDEEAPHSADPVTPPKEPMCSPGTSEKDVQMV
DTSNGTDTNTDAVSNENETTEKSNSGVIVLD
NT seq 4416 nt   +upstreamnt  +downstreamnt
atgagtagcttagtggagaggctacgtgttagatcagaaaggaggccagtttataacttg
gatgaatcagacgatgatgattatgtttccgggaaagctaaaaatccccaggagaaaatt
gaaagatttgtcagggatgacgcgaaggaggattcctgtcaagcttgtggagaaagtgag
aatcttctgaattgtgaaacctgcacatatgcttaccattccaagtgcctgcttccacca
ctaaaagctccttttcctagcaattggaggtgccctgaatgtgttagccctctgaatgat
atcgataagttattggactgtgaaatgcgccctactgttgctgatgatagcgatgcctct
aaactgggctcaaagcaaatttttgtaaaacagtatcttgtgaaatggaaaggcttatct
tatctacattgcacttgggtacctgagaaagagtttttaaaagctttcaagtcaaatccc
cgtctgaagactaaagtaaacaacttcaatcgtcagatggcatcaaacaacaactccgag
gatgaatttgttgctatccgacctgaatggacaactgttgatcggattcttgcttgcagg
ggagatgaggatgagaaggaatatcttgtgaagtacaaggaactcccttacgatgaatgt
tattgggaatttgaatcagatgtatctgcatttcagcctgaaatagaaaaatttaataaa
attcaatctaggtctcacaaaccgagcaagcaaaagagcagccttcaagatgctactgat
tcaaagaagaaatcaaaagaatttcaacagtgtgatcacagtcctgaatttctttctgga
ggctcattgcatccttatcagttagaagggctgaacttcttacgtttttcttggtccaaa
caaacacatgtaatacttgctgatgagatgggccttgggaaaactatacagagtattgca
tttttagcatctcttcgcgaagagggcatctctccgtatctggtagtagctccactttca
acattgcgaaactgggaacgtgaatttgcaacatgggcacctcaaatgaatgttgttatg
tatgttggctccgcacaagctcgtgctgtcataagggaatatgagttttactatcccaaa
aatcacaagaagatcaagaaaaagaaatctggtcaagttgttactgaaagcaagcaagat
agaataaaatttgatgtgcttctaacgtcttatgagatgattaacttggactcaacatcg
ctgaaaccaataaagtgggaatgcatgattgttgatgaaggtcatcgtctaaaaaacaag
gactctaaattgtttctctcgctgaagcagtactgtagtaaccatcgtgtgcttttgact
ggaacccctcttcagaacaatctggatgaacttttcatgctcatgcatttccttgatgct
gggaagtttgcaagtttagaggaattccaagaggagtttaaggatataaatcaagaggag
cagattttgagacttcataaaatgttggctccccatctcctcagaagggtgaaaaaggat
gtcatgaaagagctacctcctaagaaggaactcattctacgtattgaactaagtagcaag
cagaaagaatattacaaggccattctgactcgcaactatcaaatactaactcgacgtggt
ggtgcacagatttctcttatcaatgtggttatggaattgcgcaaactctgttgtcatcct
tatatgttagaaggagtggagccggatattgaagataccaatgaatctttcaggcagctc
cttgaaacttctgggaaattgcaactgttggacaaactgatggtgagacttaaagaacaa
gggcatagagttctcatttactcacaatttcagcacatgctggacttgctagaagattac
tgcactcataagaaatggatgtatgaacggatagatggaaaggttggtggagctgagaga
caagtgcgcatagatcgatttaatgccaaaaattcttcaagattttgctttcttctctca
actagagccggaggactgggaataaaccttgcaactgctgatactgttattatatatgat
agtgattggaatccccatgctgatcttcaagcaatggctagagcacatcgacttgggcaa
accaacaaggtattgatttataggctcataacccgaggaactattgaggaacggatgatg
caactgactaagaagaaaatggttttagagcaccttgttgttgggaggctgaaggcacag
aatattaatcaggaagagttagatgacatcataagatatggttcaaaggagctttttgct
gatgagaatgatgaagcagggaaatcacgtcaaattcattatgatgatgctgctattgat
cgattacttgaccgtgaacaagttggagatgaagaaacatcattggatgatgaagaggaa
gatggatttttgaaggcgtttaaggttgcaaattttgagtatattgacgaagcagaggct
gccgcagaggaggaagctcaaaaggcagccatggaaacgagatccaccataaacaattct
gaaagaactgaaaaaacaaacttttgggaagagttgctaaaagatagttatgaagtacac
aaagttgaggagtttaatgccttgggcaaaggaaagagaagccgtaagcagatggtgtct
gttgaagatgatgaccttgctggtctagaagatgtaagctctgatggcgaggatgacaat
tatgaagctgagttgactgatggtgaaacaacatcatcaggagtagttcagacagtaaga
aggccttataagaagaaagctcgagtggataatacagaaccaattcctctgatggaaggt
gaaggaagatcattcagagtattgggttttaaacaaaatcagagggctgcctttgtacaa
atcttgatgaggtttggggttggggactatgactggaaggagtttgcctctcgattgaaa
cagaagacatatgaagaagtagaaaattatgggagattattcttgactcacatagcggaa
gatctaactgactcaccaaatttttcagacggtgttcctaaagagggtcttagaatacaa
gacgtacttgttaggattgctgtcctgcttttgataagggataaggcgaggtttgcatca
gagaacccaggtagcgcccttttcacagatgacattatactgcgctacccaggcctgaag
agtggaaaattttggaaacaagagcacgattcattgttacttcatgcagtattgaagcat
gggtatggaagatggcaagctattgttgatgacaaggacttgaaggttcaagagataatc
tgtaaagagttgaatcttccttgtataagactacctgtccttgggcaaggagttgctcaa
gcacaaaatggttctacttctaacattgctaatgcagaagctcctagcacccaggcacag
gcaaatgttgctggaaatgatgtagcagctgatgttgctcaggggacaattgatgctgca
aacccagcactgtcatatcgagattcatctatattatttcattttagagatatgcagaga
cgacaggtagagttcattaagaaaagagtgctgcttttagagagaggactcaatgcggag
taccagaaaatttactttggtggtgatataaaaccaaatgagattacaagtgaagaggct
gatggtgaaacaaaggctgctgacagctcaagtttaggctccatagagatcaatgctcaa
atgattgaccagttgcctcagatggaaccaattggatcagaagaaatttcagcagctgct
tgtgatgacaatcctgatagattggcattggctgagcattataacaagatgtgcacggtg
ttggagcaaaatgttcatgaaacaattcagatatccttaaccaaccaccctgcaagtctc
aagttgagacagggccttcagccattagagatgatttttgaacagatgaatcaaattctc
tctcctttacaacaaaaatctacttcggaacaaggtactctgggaccgaacaaacatgtg
caagctgaatcacagagcaatcaggctaaacttcattcaccatctgaccaacagaaggag
aataacgacaatgctgctgctgtggaagatgttgaaatgaaagaggcaacgacagagcca
aaattggaagaaaccattgcatcttcggatgaagaagctccacattctgcagacccagtt
acgcctccaaaagaacctatgtgttcaccagggacatctgaaaaggatgtgcaaatggtc
gatacaagtaatggtactgacaccaacactgatgctgtatcaaatgaaaatgaaaccaca
gagaaatcaaattcgggggtgatcgttttagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (14)   
   Pfam (14)   
All databases (29)   

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