KEGG   Populus trichocarpa (black cottonwood): 7482382
Entry
7482382           CDS       T01077                                 
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7482382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7482382
   03016 Transfer RNA biogenesis [BR:pop03016]
    7482382
Enzymes [BR:pop01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     7482382
Messenger RNA biogenesis [BR:pop03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     7482382
Transfer RNA biogenesis [BR:pop03016]
 Prokaryotic type
  tRNA degradation factors
   7482382
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1
Other DBs
NCBI-GeneID: 7482382
NCBI-ProteinID: XP_002319726
Position
13:complement(4865545..4882800)
AA seq 925 aa
MLANPSTSTTLHYRPNSTHNPPFSHTNHSCKLSLSPKCPRFTNFAKSKCSSLSLLLSRRK
RERLVTVVKAFEDTSAVNDGPQSLPQPISVKIPVGDRHIMVETGHLGRQASGSVTVTDGE
TIIYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGRLKDHEVLICRLIDR
PLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLV
DNKFIVNPTTKEMEESKLDLLLAGTDSAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICN
EVNALVKKCGKPKMLDAIKLPPPELYKHMEEIAGDELVKVLQIRNKVPRRKALQSLEEKV
LSILTEKGYVSKDQSFGIPETVADLLEVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLF
SEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGET
QSLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLA
ERALEPILPSENDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMG
MVLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRT
ALLQARDGRKHILAEMLKCSPSPSKRLSKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIE
ETGVEAIDTQDDGIVKITAKDLSSIEKSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFV
EIAPGHEGLCHISELSSNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEVTSE
KSSAEQQARDLTEGNTEQSKDKSRDTKFVNPTKVDSVEDAPLSKKKAYKRLTSSARDGPK
NSSTTVSSIASKDENSLVNGEAKIG
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgctagcaaaccctagcaccagtactactctccattacaggccgaattccacacacaac
cctccattttcccacactaatcatagctgcaagctctctctctcccctaaatgccctcgc
ttcaccaattttgcaaaatccaagtgttcttcactttctctgcttctatcaagaagaaaa
cgtgaaaggttggttactgtagtcaaagctttcgaggacacctctgctgtaaatgacggc
cctcagtctttgcctcagcctatttctgtcaaaatccccgtcggtgacagacatataatg
gttgagacgggccatcttgggagacaagctagtggttccgtcacagtcacagatggagaa
actattatctatacatctgtttgtttggatgatgttcctagtgagccttctgatttctat
cctctttctgtaaactatcaagagcgattttctgcagcaggtcgaactagtggaggattt
ttcaaacgagaagggaggttgaaagatcatgaggttcttatttgtagattgatagatagg
cctttgcgcccaactatgctcaagggattttaccatgaaactcagatactatcttgggtt
ttaagctatgatggcttgcattctccagattctttggctgtcacagcagctgggatagca
ttagctctttcggaagtgccaaatacaaaagtgattgcaggagttcgagttggccttgtt
gacaacaaatttattgtgaatccaacaaccaaggagatggaagagtcaaaattagattta
ttgctggctggaacagacagtgcaatattcatgatagagggttattgcaattttcttccg
gaagaaaaattgcttgaagcagtacaaattggacaggatgcagtgaggacaatttgcaat
gaggtgaatgctttggtgaagaagtgtgggaaacctaaaatgcttgatgcaatcaaatta
cctcctcctgagctatataagcatatggaggaaatcgctggtgatgagttagtaaaagtg
ttgcaaattaggaataaagtaccaagaagaaaggcccttcaatcactggaagaaaaagtg
cttagtatacttacagaaaagggatatgtaagcaaggatcaaagttttggaatccctgaa
acagttgcagacttgctagaggttgaagaggaggatgaggaagttgttgtagatggtgaa
gtagatgaaggtgatgtccacataaagccaaatggacgcagatcctctccttcgctgttt
tctgaggtggatgtgaagctggtatttaaagaagttacatccaaattcttgcggagacgt
attgtggagggaggaaaaagaagtgatgggagaaccccagaagggatacgtccaattgat
tccagctgtggattactccctagagcacacggaagtgctcttttcacccgtggagaaaca
cagtcattggcggttgttacacttggtgataaacaaatggcacaaagagtagacaacctt
gtggatgaagaggaattcaagaggttctatctacagtactcatttcctccatcatgtgtt
ggagaagtaggccgcataggagcacctagtagaagagaaatcggtcatggaatgcttgct
gagagagctcttgaacctatattaccttctgaaaatgattttccttatactgtacgagtt
gagagtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgc
ttggcactacaagatgctggtgttcctgtgaaatgtatgattgctggcatagcaatgggt
atggttctcgacactgaggaatttgggggcgatggaacaccactcattctgtctgacata
accggatcagaagatgcttctggagatatggatttcaaggttgctggaaatgaagatgga
gtaactgcatttcagatggacataaaggttggaggaattactttacctgtcatgaggacg
gcattgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctca
ccttccccttctaaaaggctttctaagtatgccccattgattcatattatgaaggtcaat
ccagagaaagttaacattatcattggttctggtgggaagaaggtgaagagtatcatagaa
gaaaccggagtagaggctattgacacacaggatgatggaattgtaaaaattactgcaaag
gatttgtcaagtatagagaagtccatatccattattagtcaactaactatggttccagct
gttggtgatatctacaagaactgcgagatcaaatcagtagctccttacggagtttttgtt
gagatagccccggggcatgagggactctgccacattagtgaactgagttctaactggttg
ccgaaggcagaagatgctttcaaagttggagatcgtgttgatgttaaactcattgaggta
aatggaaagggacaacttcgccttagtcgcaaagcattacttcctgaagtgacttcagag
aagtccagtgcagagcagcaggcaagggatttaactgaagggaatactgaacagtcaaag
gataaaagccgtgatacaaaatttgtaaatcccaccaaagttgattcagtagaggatgct
ccactttcaaaaaagaaggcttacaagagattaaccagttctgccagagatggaccaaag
aacagtagtacaactgtcagtagtatcgcaagcaaagatgaaaatagtttagtgaatgga
gaagctaagattggatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system